Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6 138 2e-27 seq4 100 6e-16 seq2 100 6e-16 seq1 100 6e-16 seq2992 98.7 2e-15 seq5 98.7 2e-15 seq2989 89.7 1e-12 seq7 89.7 1e-12 >seq6 Length=38222195 Score = 138 bits (152), Expect = 2e-27 Identities = 344/510 (67%), Gaps = 17/510 (3%) Strand=Plus/Minus Query 230128 AACAAGGCAAAGTGGGCTCAGAAATGGCTAGAAC-CTGGTAAATCGTTTGCCGAGCGTCT 230186 || ||||| ||||||| | ||||||| | || || ||| | || || ||||| | Sbjct 28139230 AAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGGCTCCGAAA-CTTTCGCGGAGCGGAT 28139172 Query 230187 CGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTG 230246 ||| |||| | || || ||||| || | || || || || |||||||| || ||||| Sbjct 28139171 CGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTCTGCGCGATATTTTG 28139112 Query 230247 GCTGCGGAACAAAG----GTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTC 230302 ||| || |||| | ||||||| || || | || |||||||| ||| | Sbjct 28139111 GCT----AAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCGC 28139056 Query 230303 GCGACGAGGGTCTCCATCAACAGTTCGGCGAGC-TTATGTATTCAAAGCTCCAGAACAAG 230361 | || || || ||||| | |||| || || || | || || |||| || ||| Sbjct 28139055 GAGATGAAGGCCTCCACTGCGACTTCG-CGTGCCTTCTCTACTCCCTCCTCCGGATGAAG 28138997 Query 230362 CTACCATTCGAGACGGTCAAACAAATCATTACAGAA-GCAGTTGAAAACGAAAAGGAGTT 230420 || | ||| || || |||| | | ||| || ||||| | || |||||||| Sbjct 28138996 CTCACCGAGGAGCGCGTGAAGTCAATCGTG-CGGAACGCGGTTGACATAGAGAAGGAGTT 28138938 Query 230421 CATTTGTGACGCTATTCCATGTCGCCTTA-TTGGCATGAACGCTGAACTTATGGGACAGT 230479 | | || ||||| | || || ||||||| |||| ||||||| ||| || ||||| |||| Sbjct 28138937 CGTCTGCGACGCGTTACCGTG-CGCCTTAGTTGGGATGAACGGTGATCTGATGGGTCAGT 28138879 Query 230480 ACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACT 230539 ||||||| ||||| || || | | | | ||| | || || | |||| |||| | Sbjct 28138878 ACATCGAGTTCGTCGCTGATAGGCTGCTGGGTGCGTTGGGATATGGGAAACTGTATGATG 28138819 Query 230540 CTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCG 230599 ||||||| |||| | |||||||| ||| ||||| ||||||||||| ||||| | Sbjct 28138818 TGCAGAACCCATTTGATTGGATGGAGCTGATTAGTCTTCAGGGGAAGACCAATTTCTTTG 28138759 Query 230600 AAAAGCGTGTCAGTGACTATCAG-AGGCCT 230628 | ||| | || | || || ||| |||||| Sbjct 28138758 AGAAGAGAGTTGGGGAGTACCAGAAGGCCT 28138729 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 |||||||||||||||||| |||||||||| || || |||| || |||||||||||||||| Sbjct 36512441 TTGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 36512500 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 36512501 GCCCCACGGTGGGC 36512514 >seq4 Length=23292877 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 3563397 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3563338 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3563337 CCCCACGGTGGGC 3563325 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 16998862 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16998803 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16998802 CCCACGGTGGGC 16998791 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 19012662 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 19012721 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 19012722 CCCACGGTGGGC 19012733 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||| |||||||||| Sbjct 5076128 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAGC 5076187 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 5076188 CCCTCGGTGGGC 5076199 >seq2 Length=33308843 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 632098 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 632157 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 632158 CCCCACGGTGGGC 632170 >seq1 Length=22681039 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 2518847 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2518906 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 2518907 CCCCACGGTGGGC 2518919 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 5104168 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5104109 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 5104108 CCCACGGTGGGC 5104097 >seq2992 Length=1989283 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1750390 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1750449 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1750450 CCCACGGTGGGC 1750461 >seq5 Length=29328693 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 448223 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 448164 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 448163 CCCACGGTGGGC 448152 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 22917885 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 22917826 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22917825 CCCACGGTGGGC 22917814 >seq2989 Length=508934 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||| |||||||||| Sbjct 164201 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAGC 164260 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 164261 CCCTCGGTGGGC 164272 >seq7 Length=23403891 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||| |||||||||| Sbjct 16570558 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGAGGGTTCGAGC 16570499 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 16570498 CCCTCGGTGGGC 16570487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057782689328240