Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq6 120 3e-22 >seq6 Length=38222195 Score = 120 bits (132), Expect = 3e-22 Identities = 377/580 (65%), Gaps = 7/580 (1%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | || || |||| ||| | ||||| || || ||| Sbjct 28139022 AGGCACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTC 28139081 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || |||||| || || || |||| ||||||||||||| ||| || || ||| Sbjct 28139082 AGACCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAG 28139141 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || || || ||| | || || || | | || || ||| | || || || Sbjct 28139142 AAGATCCCTTCCACGCAGGCGAAGGCCACGATCCGCTCCGCGAAAGTTTCGGAGCCGT-- 28139199 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 ||| |||||||| | |||||| || |||| | | |||| || || || | |||| Sbjct 28139200 CGA-TCCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCC 28139258 Query 17201 TTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTAC 17260 || | || || | ||| | || || || |||| ||| ||||||||| Sbjct 28139259 CGGAAGAGACGGGACTTCTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTAC 28139318 Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320 || |||||||| |||||||| || || ||||| || ||||| ||| || || |||| Sbjct 28139319 ATCTCGGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAG 28139378 Query 17321 ATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCG 17380 | || || ||| ||| | | | || ||||| ||| |||||||||||| ||| Sbjct 28139379 ACCTGGACCTCCTTCATGAACCTTCCGGCAAGATTCTCGAGTACGATGCCGTCGGAGGCG 28139438 Query 17381 GCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAG 17440 ||||| || || | | || | ||||| | || ||| | || || || |||| Sbjct 28139439 GCGAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAG 28139498 Query 17441 TCCTTTAAATCTTTGGAT--ATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCT 17498 | |||| ||| | ||| || || |||| |||||| || ||| | |||| Sbjct 28139499 TGGCGCTGGTCTT--GATCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCT 28139556 Query 17499 TTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 | || ||||| | ||| || || |||||| || ||||| Sbjct 28139557 TCTTGTACATCTCCCAGATCTCCGGGTATTGAATCGGGAA 28139596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517525881512640