Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 3e-14 seq6 86.0 5e-12 seq3 86.0 5e-12 >seq2 Length=33308843 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || || ||||| || ||||||||||| ||| |||| | | Sbjct 6938832 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 6938773 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | ||||| ||| ||| || |||||||| | ||| ||| || Sbjct 6938772 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 6938713 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || ||||||||||| || || || | || || || || |||| |||||||| Sbjct 6938712 GCAGAGGCTTATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 6938653 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 ||||| || || || ||||| || ||||| | || |||| || ||| Sbjct 6938652 CATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGGG 6938604 Score = 86.0 bits (94), Expect = 5e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 |||||| || || || |||||||| |||||||| | || ||| | || | ||||| Sbjct 6939174 AGATCAGCAGAGGCTCATCTTTGCCGGCAAACAGCTAGAGGATGGCCGCACCCTTGCCGA 6939115 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||||||| |||||||| |||||||||||| ||||| Sbjct 6939114 TTACAATATCCAAAAGGAGTCTACTCTTCACCTGGTG 6939078 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25108 ATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 25167 || ||||| |||||| || || || ||| | ||| |||||| || || || |||| Sbjct 6938986 ATGTCAAGGCAAAAATCCAGGACAAGGAGGGTATCCCCCCAGATCAGCAGAGGCTCATCT 6938927 Query 25168 TTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAAT 25227 |||| || ||||| ||||| || | |||| | || || ||||| ||||||||||||| Sbjct 6938926 TTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTACAACATTCAAAAGGAAT 6938867 Query 25228 CTACTCTTCACATGGT 25243 |||| | ||| |||| Sbjct 6938866 CTACCTTGCACTTGGT 6938851 >seq6 Length=38222195 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || |||||||| ||| | || ||||| || || ||||||||| Sbjct 19322131 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 19322072 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | |||| | || |||||||| || |||||||| || ||||||||| | || ||| Sbjct 19322071 GATGGAAGAACTCTTGCAGATTACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTA 19322012 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| || || | ||| ||||| || ||| | |||||||| || || || ||||| Sbjct 34537857 GATAAGGAGGGAATTCCCCCGGATCAGCAGAGATTGATCTTTGCCGGTAAGCAGTTGGAG 34537798 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || || |||||||||||||||| || ||||| || || |||||| ||||| | Sbjct 34537797 GACGGCAGGACCCTGGCCGATTACAATATCCAGAAGGAGTCGACCCTTCACTTGGTGCTC 34537738 Query 25248 CGATT 25252 ||||| Sbjct 34537737 CGATT 34537733 >seq3 Length=27879571 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | || ||| || || |||||||||||||| || || || | || Sbjct 13841891 GATAAAGAAGGTATCCCACCAGACCAGCAGAGACTTATCTTTGCTGGGAAGCAGCTTGAG 13841832 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||| | | |||| || |||||||| |||||||||||||||||||| ||||| Sbjct 13841831 GATGGCCGTGCCTTGGCTGACTACAATATCTAAAAGGAATCTACTCTTCACCTGGTG 13841775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410781539925872