Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3 136 6e-27 seq2 123 4e-23 seq5 93.3 6e-14 seq6 86.0 9e-12 >seq3 Length=27879571 Score = 136 bits (150), Expect = 6e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAA 124596 ||||||||| ||| | ||||| | ||||| |||||||| ||| | || | ||| || Sbjct 13774911 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 13774970 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || |||||| |||| | || || ||||| || |||||||| || || || || | Sbjct 13774971 A-GACACAATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACC 13775029 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || ||||||||||| || | |||||| || | ||| | | |||||| | Sbjct 13775030 AGCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGATGGTAGGACACTGGCAGATTACA 13775089 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || || || || |||||| |||||||||| | ||| |||| ||||| || Sbjct 13775090 ACATACAGAAGGAGTCAACTCTGCATTTGGTGCTCCGTCTACGTGGTGGGAT 13775141 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || || || || || | ||| ||||| Sbjct 13656680 ATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACAATCACCTTGGAGGTTGAAAGTTCA 13656739 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| |||| | || || ||||| || ||||| || || || || || || Sbjct 13656740 GATACAATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAGGGCATTCCTCCAGACCAG 13656799 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| ||||||||||| ||||| |||||||| |||| || | | || || ||| Sbjct 13656800 CAGAGGCTCATTTTTGCAGGGAAACAGCTAGAGGATGGTCGCACTCTTGCGGACTACAAT 13656859 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||||||| | || ||||| || ||| | || ||||| || Sbjct 13656860 ATTCAGAAGGAATCAACTCTTCACTTGGTGTTGCGTCTCCGTGGTGGCAT 13656909 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || |||||||| || ||| | || | ||| | Sbjct 13656908 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 13656967 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || |||| | ||| |||||||| ||||| || ||||| || || || || Sbjct 13656968 GACACCATAGATAATGTGAAAGCTAAAATTCAGGATAAGGAGGGTATTCCTCCAGACCAG 13657027 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||||||||| || || | |||||| | | ||| | | ||| |||||| Sbjct 13657028 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAAT 13657087 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || ||| |||| ||||| | ||| | || |||||||| Sbjct 13657088 ATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGCGGTGGTAT 13657137 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || |||||||| || | | | || | ||| | Sbjct 13841528 ATGCAAATCTTTGTCAAGACCCTTACTGGCAAAACCATCATTGTGGAAGTCGAAAGCTCT 13841469 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | ||| ||||||||||| || || ||||| || || || ||| Sbjct 13841468 GACACCATTGATAATGTGAAAGCTAAAATTCAAGACAAGGAGGGTATTCCCCCAGACCAA 13841409 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||| | ||||||||||| || || | |||||| | | ||| | | || |||||| Sbjct 13841408 CAAAGGTTGATTTTTGCAGGCAAGCAGCTTGAGGATGGAAGGACACTTGCTGACTATAAT 13841349 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || || ||| |||| || || | ||| | || |||||||| Sbjct 13841348 ATTCAAAAGGAGTCCACTCTGCAATTAGTGCTTCGTCTGCGCGGTGGTAT 13841299 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || || || || ||| | ||| |||| Sbjct 13841756 ATGCAAATCTTTGTTAAGACCCTCACCGGTAAGACAATCACTTTGGAGGTTGAGAGTTCC 13841697 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| |||| | || || ||||| || || || || || || || || || Sbjct 13841696 GATACAATTGATAATGTCAAGGCAAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 13841637 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| ||||||||||| ||||| |||||||| ||| || | | |||||| || Sbjct 13841636 CAGAGGCTCATTTTTGCAGGGAAACAGCTAGAGGATGGTCACACTCTTGCAGATTACAAC 13841577 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||||||| | || ||||| || ||| | | ||||| || Sbjct 13841576 ATCCAGAAGGAATCAACTCTTCACTTGGTGTTGCGTCTTTGTGGTGGCAT 13841527 Score = 107 bits (118), Expect = 3e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | |||| || ||||||||||| || ||||| || || ||||| Sbjct 6885768 TGATACCATTGACAATGTCAAACCCAAGATTCAAGATAAGGAGGGTATCCCGCCGGATCA 6885827 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || || || ||||| || || |||||| |||| || || | |||||||| Sbjct 6885828 GCAAAGGTTGATCTTCGCCGGAAAGCAGTTGGAGGATGGTCGTACTTTGGCCGATTATAA 6885887 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||| || ||||| || | |||| | ||| | ||| | || |||||| Sbjct 6885888 TATCCAGAAAGAGTCCAACCTGCACCTTGTTCTGCGTCTCCGTGGTGGT 6885936 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || ||||| || || || | ||| ||||| | Sbjct 13842212 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 13842153 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | ||| ||||| || || || ||||| || || || || ||| Sbjct 13842152 GACACCATTGATAATGTCAAAGCCAAAATCCACGACAAGGAAGGCATCCCCCCGGACCAA 13842093 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| |||||||| || || || | |||||| | | || | | || || ||| Sbjct 13842092 CAAAGGCTGATTTTTGCTGGTAAGCAGCTTGAGGATGGACACACCCTTGTTGACTACAAT 13842033 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| ||| | || ||||| | | | || |||||||| Sbjct 13842032 ATTCAAAAGGAATCGACTCTTCACCTGGTTCTCAGACTCCGCGGTGGTAT 13841983 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || ||||| || || || | ||| ||||| | Sbjct 13656224 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 13656283 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| ||||| |||||||| ||||| || || || || || Sbjct 13656284 GACACCATCGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 13656343 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || |||||||| ||||| || | |||||| | || || | | || || ||| Sbjct 13656344 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGAGGATGGACGCACCCTTGCTGACTACAAT 13656403 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 |||||||| ||||| ||| | || |||| Sbjct 13656404 ATTCAAAAGGAATCGACTCTACACCTGGT 13656432 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || || || ||||| | ||| | || | Sbjct 13775140 ATGCAGATCTTTGTGAAGACCCTCACTGGAAAGACCATAACCTTGGAGGTAGAGAGTTCT 13775199 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| |||| | ||| || ||||| || || || || || || || || || Sbjct 13775200 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAG 13775259 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || | || ||| | || || ||| |||||| ||| Sbjct 13775260 CAGAGGCTCATATTTGCTGGTAAGCAGCTTGAAGATGGCCGGACTCTAGCAGATTACAAT 13775319 Query 124719 ATTCAAAAAGAATCAAC 124735 |||||||| || ||||| Sbjct 13775320 ATTCAAAAGGAGTCAAC 13775336 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| || || ||||| || || || ||||| || || || |||||||| || || || | Sbjct 9477576 TTCAGGACAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGT 9477517 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACT 124736 | || ||| ||||||| | | |||||||||||| |||||||| |||||| Sbjct 9477516 TGGAAGATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACT 9477467 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || |||||||| ||||| || | ||| ||||| | Sbjct 13774228 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 13774287 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || ||||| || || || || || || || || Sbjct 13774288 GACACTATTGACAATGTCAAGGCAAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCAG 13774347 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| || ||||| || || || | ||||| | |||||| | | || || || Sbjct 13774348 CAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACACTTGCTGACTACAAC 13774407 Query 124719 ATTCAAAAAGAATCAAC 124735 ||||||||||| || || Sbjct 13774408 ATTCAAAAAGAGTCCAC 13774424 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || | | ||||| ||||| | ||| |||| | Sbjct 13841984 ATGCAAATCTTTGTGAAGACTCTCATTGCGAAAACCATAACCTTGGAGGTTGAGAGTTTT 13841925 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || || || ||||||||||||||||| ||||| || || Sbjct 13841924 GACACCATTGACAACGTGAAGGCAAAGATCCAAGATAAAGAAGGTATCCCACCAGACCAG 13841865 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || ||||| ||||| || || || | |||||| | || | || | || || ||| Sbjct 13841864 CAGAGACTTATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTGCCTTGGCTGACTACAAT 13841805 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || |||| ||||| ||| | || |||| Sbjct 13841804 ATCTAAAAGGAATCTACTCTTCACCTGGT 13841776 >seq2 Length=33308843 Score = 123 bits (136), Expect = 4e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAA 124596 ||||||||| ||| | ||||| | || || ||||| || ||| | || | ||| || Sbjct 6938832 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 6938773 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || |||||| ||| | || || ||||| || |||||||| || || || || | Sbjct 6938772 A-GACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACC 6938714 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||| ||||||||||| || | ||||| | | ||| | | |||||| | Sbjct 6938713 AGCAGAGGCTTATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACA 6938654 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||||| ||||| || ||| |||||||||| | ||| |||| ||||| || Sbjct 6938653 ACATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGGGAT 6938602 >seq5 Length=29328693 Score = 93.3 bits (102), Expect = 6e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| | || ||||| || || || | ||| | || ||| Sbjct 19804432 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTGGAGGTGGAGAGCTCC 19804491 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | ||| || |||||||||| || ||||| || || ||||| Sbjct 19804492 -GATACCATTGACAATGTCAAAGCCAAGGTTCAAGATAAGGAGGGTATCCCGCCGGATCA 19804550 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || || || ||||| || || |||||| |||| || || | |||||||| Sbjct 19804551 GCAAAGGTTGATCTTCGCCGGAAAGCAGTTGGAGGATGGTCGTACTTTGGCCGATTATAA 19804610 Query 124718 TATTCAAAAAGAATC 124732 ||| || || || || Sbjct 19804611 TATCCAGAAGGAGTC 19804625 >seq6 Length=38222195 Score = 86.0 bits (94), Expect = 9e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| ||||| ||||| || || ||||||||||| || | |||||||| || || |||| Sbjct 19322136 TTCAGGATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAAT 19322077 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGG 124746 | || ||| | |||| | | |||||| || || ||||| || |||||| | || | | Sbjct 19322076 TGGAAGATGGAAGAACTCTTGCAGATTACAACATCCAAAAGGAGTCAACTCTTCACCTAG 19322017 Query 124747 TTTTA 124751 ||||| Sbjct 19322016 TTTTA 19322012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755427217126400