Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq6 113 4e-20 seq3 104 2e-17 seq5 91.5 1e-13 seq2 89.7 4e-13 >seq6 Length=38222195 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| || || |||| || Sbjct 34520296 ACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCA 34520355 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| || | || ||| ||||| ||||| | |||||||||||| Sbjct 34520356 AGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGG 34520415 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | ||| |||| | ||| ||||| | ||| || |||||| Sbjct 34520416 ATCTTGGCCTTGACGTTGTCGACGGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTCTTG 34520475 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || |||||||| ||||||||| Sbjct 34520476 CCGGTTAGGGTTTTCACAAAAATTTGCATG 34520505 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| || || |||| || Sbjct 34538199 ACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTCCGGCCGTCCTCG 34538258 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| || | || ||| ||||||||||| | |||||||||||| Sbjct 34538259 AGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGG 34538318 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||| | ||| || |||||| Sbjct 34538319 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAACCTCGAGGGTGATGGTCTTG 34538378 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| || ||||| ||||| |||||| Sbjct 34538379 CCGGTCAGGGTTTTCACGAAGATCTGCATG 34538408 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45149 TTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATC 45208 ||||| |||||||||||| || ||| |||| || || || ||||||||||| || Sbjct 22063129 TTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATG 22063070 Query 45209 AACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCC 45268 | ||||| || || ||||| | || |||||||| || || ||| || | Sbjct 22063069 AGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGTCG 22063010 Query 45269 ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAG 45328 | | |||| | | ||||||||| | || || ||||| ||||| || || ||||| || Sbjct 22063009 ATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGAAT 22062950 Query 45329 ATTTGCATGTT 45339 || ||||| || Sbjct 22062949 ATCTGCATCTT 22062939 >seq3 Length=27879571 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG-TCGTC 45186 ||||||||||| ||| |||||| ||||| || ||||| | || || | || || || Sbjct 13657116 ACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTC-TGCAAGTGTCCTTCCATCCTC 13657058 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || || || || || ||||||| ||| ||||| ||||| | ||||||||| ||| Sbjct 13657057 AAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGAGGAATACCCTCCTTATCCTG 13656998 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 |||||| || || | | | |||| | ||||| |||| || || || || Sbjct 13656997 AATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGGTTTT 13656938 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| || || ||||| ||||||||||||||| Sbjct 13656937 GCCGGTAAGGGTCTTGACAAAGATTTGCATG 13656907 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 || || || || ||| |||||| ||||||||||| || ||| ||| | || || Sbjct 13656660 ACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTCA 13656601 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | | ||| ||||| || || | |||||| || ||| | Sbjct 13656600 AGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTGA 13656541 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | |||| || ||| ||||||| ||| || || || Sbjct 13656540 ATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTTC 13656481 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || |||||||||||||||||||||||| Sbjct 13656480 CCAGTGAGAGTCTTCACAAAGATTTGCATG 13656451 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||||| |||||||| || |||| | || Sbjct 13656891 AACACCAAGTGAAGAGTTGATTCCTTCTGAATATTGTAGTCCGCAAGAGTGCGACCATCC 13656832 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || ||||| || || || || | || ||| ||||| ||||| | ||||| |||||| Sbjct 13656831 TCTAGCTGTTTCCCTGCAAAAATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCTTTGTCC 13656772 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| ||| ||| || | | | || || || ||||||| ||| || ||| Sbjct 13656771 TGAATCTTTGCCTTGACATTATCAATTGTATCTGAACTTTCAACCTCCAAGGTGATTGTC 13656712 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || ||||| ||||||||||||||| Sbjct 13656711 TTTCCGGTGAGGGTCTTGACAAAGATTTGCATG 13656679 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || ||| |||||||| ||||||||||| ||| || | || || Sbjct 184217 ACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGGCCATCCTCA 184158 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || |||||||| || || | || ||| ||||| || || | ||||||||||||| Sbjct 184157 AGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 184098 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||||| ||| || ||||| Sbjct 184097 ATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTT 184038 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||| ||||| Sbjct 184037 CCTGTCAAGGTCTTGACGAAGATCTGCAT 184009 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || |||||||| |||||||| || || | || | || Sbjct 13841545 AACACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCTGCAAGAGTGTGACCATCC 13841604 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || ||||| || || || || | || ||| ||||| ||||| | |||||||||||| Sbjct 13841605 TCTAGCTGTTTCCCTGCAAAAATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC 13841664 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 ||| ||| ||| || | | | || || ||| ||||||| || || ||| Sbjct 13841665 TGAATCTTTGCCTTGACATTATCAATTGTATCGGAACTCTCAACCTCCAAAGTGATTGTC 13841724 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || || ||||| ||||||||||||||| Sbjct 13841725 TTACCGGTGAGGGTCTTAACAAAGATTTGCATG 13841757 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| ||||| || ||||||||| |||||||| || |||| | | | || || Sbjct 13775120 ACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCCAGTGTCCTACCATCCTCA 13775061 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| || || || | || ||| ||||| || || | || || |||||| | Sbjct 13775060 AGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGA 13775001 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | |||| | ||||| |||| ||||| || || Sbjct 13775000 ATCTTTGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATAGTTTTC 13774941 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||||||||||||||| Sbjct 13774940 CCTGTCAAAGTCTTCACAAAGATTTGCAT 13774912 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| |||||||| || || || | || || Sbjct 183761 ACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCAAGGGTTCGGCCATCCTCA 183702 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| ||||| || || | |||||||||||| | Sbjct 183701 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGA 183642 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | | |||| | ||||||||| | ||| || |||||| Sbjct 183641 ATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTG 183582 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| || |||||||| Sbjct 183581 CCGGTGAGGGTTTTCACGAAAATTTGCAT 183553 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||||||||||||| || || | | || || || || Sbjct 13657339 GTGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTG 13657280 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| |||||||| | || ||| ||||| || || | |||||||| ||| || | | Sbjct 13657279 CTTTCCAGCGAATATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGAA-TCT 13657221 Query 45253 TTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 | |||| | | || | | || || ||| ||||||| || || ||||| || | Sbjct 13657220 TGGCTTTCACATTGTCAATCGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTCCCTG 13657161 Query 45312 TCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| || |||||||| ||||| Sbjct 13657160 TCAGAGTTTTGACAAAGATCTGCAT 13657136 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 || || ||||| ||| |||||| ||||| || ||||| ||| | | || || Sbjct 13841320 ACTAATTGCAGAGTGGACTCCTTTTGAATATTATAGTCAGCAAGTGTCCTTCCATCCTCA 13841379 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || ||||||| |||||||| || || | |||||||||||| | Sbjct 13841380 AGCTGCTTGCCTGCAAAAATCAACCTTTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGA 13841439 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | |||| | || || ||||| | || || ||| Sbjct 13841440 ATTTTAGCTTTCACATTATCAATGGTGTCAGAGCTTTCGACTTCCACAATGATGGTTTTG 13841499 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| ||||||||||||||| Sbjct 13841500 CCAGTAAGGGTCTTGACAAAGATTTGCATG 13841529 >seq5 Length=29328693 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| || |||||||| || || |||| || || || |||||||| || Sbjct 19804395 CTCCTTCTGGATATTGTAGTCAGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCAAA 19804336 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || |||||| || ||||| | |||||||||||| | | || |||| || Sbjct 19804335 GATGAGCCTCTGTTGATCTGGAGGGATGCCCTCCTTGTCCTGGA-TCTTGGCTTTGACGT 19804277 Query 45265 CG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | | |||| | ||||||||| | ||| | |||||||| || || ||||||| Sbjct 19804276 TGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGACGGTCTTGCCGGTAAGCGTCTTCA 19804217 Query 45324 CAAAGATTTGCATGTTG 45340 ||||||| ||| || || Sbjct 19804216 CAAAGATCTGCCTGATG 19804200 >seq2 Length=33308843 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| ||||| || ||| |||||||||||||| || |||| | |||| || Sbjct 6938623 ACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCCAGTGTCCTGCCGTCCTCA 6938682 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| || || || | || ||| ||||| || || | || || |||||| | Sbjct 6938683 AGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGA 6938742 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | |||| | ||||| |||| ||||| || || Sbjct 6938743 ATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATGGTTTTC 6938802 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||||||| |||||||| Sbjct 6938803 CCGGTCAAAGTCTTCACAAAAATTTGCAT 6938831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395060523944008