Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq4 114 1e-20 seq3 98.7 8e-16 seq2 91.5 1e-13 seq6 86.0 5e-12 >seq4 Length=23292877 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | |||| |||||| || || || ||||| |||||||| || || Sbjct 15563269 TCCTCCCCTGAGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGC 15563328 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||| ||| ||||| ||| |||| ||||| |||||||| || Sbjct 15563329 AAGAGTTCTGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGG 15563388 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||| || || || | | |||| ||| | | | || |||| |||| Sbjct 15563389 GATGCCTTCTTTGTCCTGGATCT-TGGCTTTGACATTGTCGATGGTATCACTACTCTCGA 15563447 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| |||||| | || ||||||| ||||| || ||||||||||| || Sbjct 15563448 CCTCAATAGTGATGGTCTTCCCGGTCAGAGTTTTCACGAAAATTTGCATATT 15563499 >seq3 Length=27879571 Score = 98.7 bits (108), Expect = 8e-16 Identities = 164/236 (69%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||||||| |||| ||| || || || |||||||||||||||||||| || Sbjct 13774454 CCACCACGGAGTCTAAGCACCAGGTGGAGGGTGGACTCTTTTTGAATGTTGTAGTCAGCA 13774395 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | || || | || ||||| ||| |||| || ||||| || || ||| Sbjct 13774394 AGTGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGG 13774335 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || || | | |||||| | ||| ||||||| | || Sbjct 13774334 ATTCCCTCCTTGTCTTGGATCTTTGCCTTGACATTGTCAATAGTGTCAGAGCTTTCAACC 13774275 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT-TTTTAAAC 18333 || | |||||| | ||||| || | ||||| ||||| || ||||| | |||||| Sbjct 13774274 TCGAGGGTGATAGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCATCTGTTAAAC 13774219 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| ||| | ||||||||| ||||||||||||||||| || Sbjct 13774911 TCCACCACGCAGACGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCTGC 13774852 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | || ||||| ||||| || ||| |||| || || || ||||| ||| Sbjct 13774851 AAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGG 13774792 Query 18218 CACGCCTTCCTTATC 18232 | || ||||| || Sbjct 13774791 AATACCCTCCTTGTC 13774777 >seq2 Length=33308843 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | || |||| || || || || ||||| ||||||||||| || ||| Sbjct 6938605 CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC 6938664 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | || || | || || || ||| ||||||| || || || || ||| Sbjct 6938665 AGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGGTCTGGGGGA 6938724 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| || || ||| | | |||||| | ||| ||||| | || | Sbjct 6938725 ATGCCTTCTTTGTCCTGAATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCCACT 6938784 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || ||| |||| |||||||| || || ||||||||||||||| Sbjct 6938785 TCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCATT 6938832 >seq6 Length=38222195 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || | || | |||||| ||||| || ||||| |||||||| || || Sbjct 19321997 TCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCTGC 19322056 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||||||| || || ||| | || | ||| |||||||| || Sbjct 19322057 AAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGAGG 19322116 Query 18218 CACGCCTTCCTTATC 18232 | |||||||||||| Sbjct 19322117 GATGCCTTCCTTATC 19322131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379329908318760