Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6 217 1e-51 seq3 104 2e-17 seq2 102 7e-17 seq5 98.7 9e-16 seq4 98.7 9e-16 seq1 95.1 1e-14 >seq6 Length=38222195 Score = 217 bits (240), Expect = 1e-51 Identities = 410/595 (69%), Gaps = 11/595 (2%) Strand=Plus/Minus Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604 |||||| |||||| |||| || || || ||| | |||||||| ||||| || || ||||| Sbjct 28139600 CATGTTCCCGATTCAATACCCGGAGATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTT 28139541 Query 57605 TTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGA 57664 ||||||| ||| || || || || | | || | | || | ||||| |||| || Sbjct 28139540 CTGGACCGCCGAGGAGGTCGATCTCGATCAAGACCAGCGCCACTGGGAAACCCT--AACC 28139483 Query 57665 ATCTGAGAGAA--ATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATT 57722 | | ||||| | || || | ||||| | || || |||||||| ||||| || || Sbjct 28139482 CCCGGCGAGAAGCACTTCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATC 28139423 Query 57723 GTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGC 57782 || ||||||| | | || ||| || | || || || || |||||||| | | Sbjct 28139422 GTACTCGAGAATCTTGCCGGAAGGTTCATGAAGGAGGTCCAGGTCTCGGAGGCGCGTGCC 28139363 Query 57783 TTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATC 57842 || ||||| || || | || ||||| ||| | || || || ||||| || ||| || Sbjct 28139362 TTCTACGGCTTCCAGATCGCGATTGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTC 28139303 Query 57843 GATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATG 57902 || || ||| | || ||| |||||||| | || ||| || |||| || || Sbjct 28139302 GAGACCTACATCAAAGACTCGGACGAGAAGTCCCGTCTCTTCCGGGCCGTCGACACCATC 28139243 Query 57903 CCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCAC 57961 || ||| |||| || ||||| ||||| | | |||||||| | || || | || Sbjct 28139242 CCTTGCG-TCGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGGCTCC---GAAAC 28139187 Query 57962 GTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT 58021 ||||| ||| || | | || |||||| ||| ||||| || ||||| ||||| ||||| Sbjct 28139186 TTTCGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTT 28139127 Query 58022 -TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACG 58080 |||| | ||||||||| | || || ||||| ||||||| || ||||| || |||| Sbjct 28139126 CTGCG-CGATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACG 28139068 Query 58081 AGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTC 58135 ||||||| ||||| || || || ||||| || || |||||||| | ||||| Sbjct 28139067 AGTTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGCCTTCTCTACTC 28139013 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| || || ||||| ||||| || |||||| |||| ||||| Sbjct 34538412 CAATCATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAGA 34538353 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 ||||||| |||| | ||||| | || ||||||||| ||| | || |||| Sbjct 34538352 GCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCG 34538293 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||| | || || ||||| || || ||| | || ||| |||| || ||| | Sbjct 34538292 ACCAGCAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGGACTTTGGCCGACT 34538233 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | ||||| || || || || ||||| || ||||| || | || ||||| |||| Sbjct 34538232 ACAACATCCAGAAGGAGTCAACTCTCCACCTGGTGCTCCGTCTCAGGGGTGGTA 34538179 Score = 109 bits (120), Expect = 5e-19 Identities = 171/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 31180 AATTGAATC--AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTC 31237 |||| |||| || |||||||||||| || || || || || ||||| || |||||| || Sbjct 34520519 AATTCAATCCCAATCATGCAAATTTTTGTGAAAACCCTAACCGGCAAGACCATCACCCTC 34520460 Query 31238 GACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGC 31297 || || || ||||||| ||||| | ||||| | || ||||||||| ||| Sbjct 34520459 GAGGTCGAGAGCTCCGACACCGTCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGC 34520400 Query 31298 GTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACT 31357 | || || ||||||||| | || || ||||| || || ||| | || ||| || Sbjct 34520399 ATCCCTCCTGACCAGCAGAGGCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGTACC 34520340 Query 31358 ATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGC 31417 | ||| || ||||| || || || |||||||| || ||||| || | || ||||| Sbjct 34520339 CTCGCCGACTACAACATCCAGAAGGAGTCGACTCTCCACCTGGTGCTCCGTCTCAGGGGT 34520280 Query 31418 GGTA 31421 |||| Sbjct 34520279 GGTA 34520276 >seq3 Length=27879571 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| | || |||||| || Sbjct 13656224 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 13656283 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| || ||||||||| | || || |||||| Sbjct 13656284 GACACCATCGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 13656343 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | || || || ||||| || ||| | || || | | | || | || || || Sbjct 13656344 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGAGGA-TGGACGCACCCTTGCTGACTACAA 13656402 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| ||||||||||| || ||||| || ||||| Sbjct 13656403 TATTCAAAAGGAATCGACTCTACACCTGGTGCTCAGACT 13656441 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| | || |||||| || Sbjct 13842212 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 13842153 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| |||||||||||| | || || ||||| Sbjct 13842152 GACACCATTGATAATGTCAAAGCCAAAATCCACGACAAGGAAGGCATCCCCCCGGACCAA 13842093 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || || ||||| || ||| | || || || | || || || Sbjct 13842092 CAAAGGCTGATTTTTGCTGGTAAGCAGCTTGAGGATGGACACACCCTTGTTGACTACAAT 13842033 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| |||||||||||||| ||||| || ||||| | || |||| Sbjct 13842032 ATTCAAAAGGAATCGACTCTTCACCTGGTTCTCAGACTCCGCGGTGGTA 13841984 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || |||||||| || |||||| |||| |||||| || Sbjct 13774228 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 13774287 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | ||||| || ||| | |||||||| || | || || ||||| Sbjct 13774288 GACACTATTGACAATGTCAAGGCAAAGA-TCCAAGACAAGGAGGGAATCCCCCCAGACCA 13774346 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACT--CTATGACTATGAGCGATTAT 31369 ||| | || || || |||||||| ||| | || ||| | | ||| || || || Sbjct 13774347 GCAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACACT-TGCT-GACTAC 13774404 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||||||||| || || || || ||||| |||||||| Sbjct 13774405 AACATTCAAAAAGAGTCCACCCTCCACCTGGTGCTTAGACT 13774445 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || ||||| || |||||| | || || || | || Sbjct 183553 ATGCAAATTTTCGTGAAAACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 183612 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || |||| | | | ||| | ||||||||| || | || || ||||| Sbjct 183613 GACACCATTGACAACGTTAAGGCCAAGATTCA-GGACAAGGAGGGAATCCCCCCGGACCA 183671 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||| | || || || | ||||| || Sbjct 183672 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTTGCTGATTACAA 183731 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || ||||| || ||| |||| ||| | ||| | || |||| Sbjct 183732 CATCCAGAAGGAGTCGACCCTCCATTTGGTGCTTCGTCTGCGTGGTGGTA 183781 >seq2 Length=33308843 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||| |||| || ||||| || || | || || ||| || Sbjct 6938831 ATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTCA 6938772 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || || || |||||| |||||| | || || ||||| Sbjct 6938771 GACACAATTGATAACGTCAAGGCAAAG-ATTCAGGACAAAGAAGGCATTCCCCCAGACCA 6938713 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || || || ||| | || ||| | ||| || ||||| || Sbjct 6938712 GCAGAGGCTTATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 6938653 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| ||||| |||||||| ||| |||| || Sbjct 6938652 CATTCAGAAAGAGTCGACTCTGCATTTGGTGCT 6938620 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || || || || ||| | || || || || Sbjct 6938603 ATGCAGATCTTTGTGAAGACACTTACTGGAAAGACCATAACCTTGGAGGTAGAGAGTTCT 6938544 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || ||| || ||| | ||||||||||||| | || || ||||| Sbjct 6938543 GATACAATTGATAATGTGAAAGCAAAGATTCA-GGACAAGGAAGGCATTCCTCCAGACCA 6938485 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || ||||| ||||| || ||| | ||||| | |||| || ||||| || Sbjct 6938484 GCAGAGGCTCATATTTGCTGGTAAGCAGCTTGAAGATGGGAGGACTCTGGCGGATTACAA 6938425 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||||||| || ||||| ||||| || || ||| Sbjct 6938424 CATTCAAAAGGAGTCGACCCTTCACCTTGTCCTT 6938391 >seq5 Length=29328693 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || ||||| || || || || ||||| || |||||| |||| || || Sbjct 21081050 AACCATGCAGATATTCGTGAAAACCCTAACGGGCAAGACCATCACCCTCGAGGTGGAGAG 21080991 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||||| |||| | ||||| | || ||||||||| ||| | || || || Sbjct 21080990 CTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGA 21080931 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||| | || || ||||||||||| |||||||| || ||| | ||||| Sbjct 21080930 CCAGCAGAGGCTCATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACTCTCGCAGATTA 21080871 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||| || || || || || || || || || ||| Sbjct 21080870 TAACATCCAGAAGGAGTCTACACTCCACCTTGTCCTT 21080834 >seq4 Length=23292877 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| || || || || || || || |||||| |||| || || Sbjct 18773189 CAACCATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTGGAGT 18773248 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || ||||||||| ||| | ||||| | Sbjct 18773249 CCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGG 18773308 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || ||||| ||||| ||| | || ||| || | ||| | Sbjct 18773309 ACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACT 18773368 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || || |||||||| || || || || Sbjct 18773369 ACAACATCCAGAAGGAGTCGACTCTCCACCTCGTGCT 18773405 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| || |||||||| || || || ||||| | || || || Sbjct 15563499 AATATGCAAATTTTCGTGAAAACTCTGACCGGGAAGACCATCACTATTGAGGTCGAGAGT 15563440 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || | |||| | |||||| | || |||||| |||||| | || || || Sbjct 15563439 AGTGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCTCCAGAT 15563380 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || ||| | || || || |||||||| || ||||||| | ||| | ||||| Sbjct 15563379 CAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGCAGAACTCTTGCGGATTAC 15563320 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| ||||| || ||||||||||| ||||| | || || ||||| || Sbjct 15563319 AACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTGAGGCTCAGGGGAGG 15563270 >seq1 Length=22681039 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || |||||||| | || || || | Sbjct 22555362 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACGTTGGAGGTGGAGTCC 22555303 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || || | || |||||||| ||| | ||||| ||| Sbjct 22555302 TCCGACACCATCGATAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCGGAC 22555243 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| || |||||| | || ||| |||| | ||| || Sbjct 22555242 CAGCAGCGCCTCATCTTCGCCGGAAAACAGCTCGAGGACGGCCGGACTCTCGCCGACTAC 22555183 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || |||||||| || ||||| || Sbjct 22555182 AACATCCAGAAGGAGTCGACTCTCCACCTGGTGCT 22555148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445749416300160