Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq1 104 3e-17 >seq6 Length=38222195 Score = 107 bits (118), Expect = 2e-18 Identities = 376/581 (65%), Gaps = 12/581 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| || || || |||| || || ||||| || || || || Sbjct 28139025 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 28139084 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| | || |||||||| ||||||||||| | ||| ||| || |||||| Sbjct 28139085 CCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAG 28139144 Query 33702 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCGCTGTCATG 33757 || ||||| || ||| || ||||| | | | ||| | || ||| || ||| Sbjct 28139145 ATCCCTTCCAC-GCAGGCGAAGGCCACGATCCGCTCCGCGAAAGTTTCGGAGCCGTC--- 28139200 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| || | ||||| | ||||| || || ||||| || || || | ||| Sbjct 28139201 GATCCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCG 28139260 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 |||||| | || || | ||||| | || || |||| | || || ||||| Sbjct 28139261 GAAGAGACGGGACTTCTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACAT 28139320 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || || || ||||| ||||| || ||||| || |||||||| | ||||| | | Sbjct 28139321 CTCGGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGAC 28139380 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| || || | || | | | || | ||| || || || || || ||| || Sbjct 28139381 CTGGACCTCCTTCATGAACCTTCCGGCAAGATTCTCGAGTACGATGCCGTCGGAGGCGGC 28139440 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT- 34056 || || || | || || | || || | || ||| | || ||||| | | ||| | Sbjct 28139441 GAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTG 28139500 Query 34057 -CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 | || |||| | | ||| || || || | ||||| || || ||||| ||||| Sbjct 28139501 GCGCTG--GTCTTGATCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTC 28139558 Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 || ||||| | |||||| || | ||||| || ||||| || Sbjct 28139559 TTGTACATCTCCCAGATCTCCGGGTATTGAATCGGGAACAT 28139599 >seq1 Length=22681039 Score = 104 bits (114), Expect = 3e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472 || |||| ||| |||||||| | || | || || | |||| |||||| || ||| || Sbjct 15714602 CCTTTTGCCTCCCCCCTGATCAACATAACGGGCAGTATCATTAAAAACTCGCAGCATAGG 15714543 Query 63473 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATT 63532 ||| || || || ||| | ||||| || || ||||| | ||| |||||||||| || Sbjct 15714542 AATGATGCCATTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGAATGTT 15714483 Query 63533 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63592 || || | ||| |||||||| || ||| ||| | || ||| || || || Sbjct 15714482 GTGAACAGAGACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTCAAGGT 15714423 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 ||||| |||||||| ||||||||||| ||||| | || || |||||| Sbjct 15714422 ATCATATATGCCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 15714371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629793603949440