Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4 102 8e-17 seq2 98.7 1e-15 seq3 95.1 1e-14 seq6 89.7 5e-13 seq5 84.2 2e-11 >seq4 Length=23292877 Score = 102 bits (112), Expect = 8e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| || | ||||| || ||||| ||||| ||||| ||||| | || || || Sbjct 15563284 CAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGCAAGAGTTCTGCCATC 15563343 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| || || || |||||| ||||||| | || ||||| ||||| |||||||||||||| Sbjct 15563344 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGGATGCCTTCTTTGTC 15563403 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| || ||| | | || | || || | ||| ||||||| || | || Sbjct 15563404 CTGGATCTTGGCTTTGACATTGTCGATGGTATCACTACTCTCGACCTCAATAGTGATGGT 15563463 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| ||||||| ||||| ||||| ||||||||| Sbjct 15563464 CTTCCCGGTCAGAGTTTTCACGAAAATTTGCATA 15563497 >seq2 Length=33308843 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || || || | || |||||||| |||||||| ||||| | Sbjct 6938605 CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC 6938664 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||| || ||||| || || ||| |||| || | ||||| || || || Sbjct 6938665 AGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGGTCTGGGGGA 6938724 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| | |||| || | | || | |||||| | | ||||| Sbjct 6938725 ATGCCTTCTTTGTC-CTGAATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCCAC 6938783 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || |||||||| || || || || |||||||| Sbjct 6938784 TTCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 6938831 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||| | ||||| || ||||||||||| || || Sbjct 6938833 CCACCACGCAGACGGAGAACCAAGTGCAAGGTAGATTCCTTTTGAATGTTGTAGTCTGCA 6938892 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||| || | ||||||||| ||| |||| || | |||||||| || || Sbjct 6938893 AGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGG 6938952 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||||||| || | | || | ||| |||| | |||||| Sbjct 6938953 ATACCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCAATTGTATCGGAGCTTTCCACC 6939012 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || || | ||| ||||| || || ||||| Sbjct 6939013 TCCAAGGTGATTGTCTTCCCAGTAAGCGTCTTTACAAAGATCTGCAT 6939059 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| ||||||||||| ||||| || || ||| ||||| ||||| Sbjct 6938400 GTGAAGGGTCGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTCCCATCTTCAAGCTG 6938459 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||||||||| | || || | ||||| || ||||| |||||||| ||||| ||| | | Sbjct 6938460 CTTACCAGCAAATATGAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTC-CTGAATCT 6938518 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 ||| ||| | | || | ||| || | ||| ||||| | ||| | ||||| || | Sbjct 6938519 TTGCTTTCACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAG 6938578 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 | | || || || || || ||||| Sbjct 6938579 TAAGTGTCTTCACAAAGATCTGCAT 6938603 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||| | || ||||||||||| ||||| || || | ||| | | ||| || Sbjct 6939305 AACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTATTCAGCGAGTGTCCGCCCGTCCTC 6939364 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || |||||| ||||||| | ||| | || || || || || || ||||| Sbjct 6939365 AAGCTGCTTGCCAGCAAAGATCAGCCTTTGTCGGTCCGGGGGAATTCCCTCCTTGTCTTG 6939424 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| ||| ||| | | || | ||||| | | || ||||||| ||| | ||||| Sbjct 6939425 GATCTTTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTT 6939484 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | ||||| || || || ||||| Sbjct 6939485 GCCTGTGAGGGTTTTCACAAAGATCTGCAT 6939514 >seq3 Length=27879571 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| |||||||||| ||||| || || || || || || ||| Sbjct 183707 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTG 183648 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | || || |||| | | ||||||||||| ||| | Sbjct 183647 TCC-TGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGAT 183589 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | ||||| ||||| |||||||| Sbjct 183588 AGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 183553 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||||||||||||||| || || | ||| | ||| |||||||| || ||| Sbjct 13774424 GTGGACTCTTTTTGAATGTTGTAGTCAGCAAGTGTTCGGCCGTCCTCGAGCTGCTTGCCA 13774365 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | |||||| || || || || || || ||||| ||| ||| || Sbjct 13774364 GCAAAGATCAGCCTTTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTG 13774305 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | || ||||| | ||| | |||||||| || | ||| Sbjct 13774304 ACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTCTTGCCTGTGAGGGTT 13774245 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 13774244 TTCACAAAGATCTGCAT 13774228 >seq6 Length=38222195 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || || | ||| |||||||| || || Sbjct 34538211 GTTGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTCCGGCCGTCCTCGAGCTGCTTTCCG 34538270 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || | ||||| |||||||| ||||| || ||||| ||| || || Sbjct 34538271 GCGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 34538330 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||| ||||| | ||| | ||||||||||||| ||| Sbjct 34538331 ACGTTGTCGATGGTGTCGGAGCTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTT 34538390 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 34538391 TTCACGAAGATCTGCAT 34538407 >seq5 Length=29328693 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| |||||||| || || ||| |||| || | || ||||| ||||| ||||| || || Sbjct 19804359 GTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGTTGATCTGGAGGGATGCCCTCCTT 19804300 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || ||| | | || | ||||||| | ||||||||| | ||| || Sbjct 19804299 GTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGAC 19804240 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGC 139762 ||||||||||| | ||| || || || || ||| Sbjct 19804239 GGTCTTGCCGGTAAGCGTCTTCACAAAGATCTGC 19804206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496045099961600