Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 120 4e-22 seq1 120 4e-22 >seq6 Length=38222195 Score = 120 bits (132), Expect = 4e-22 Identities = 376/578 (65%), Gaps = 6/578 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| |||||||| || || || |||| || | ||||| || || || || Sbjct 28139025 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 28139084 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| | || |||||||| ||||||||||| | |||| || || || ||||| Sbjct 28139085 CCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCCGAGAAGAA 28139143 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138 ||| ||||| || ||| ||||| || | | ||| | || | || | | | || Sbjct 28139144 GATCCCTTCCACGCAGGCGAAGGCCACGATCCGCTCCGCGAAAGTTTCGGAGCCGTCGAT 28139203 Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 ||| || | ||||| | ||||| || || ||||| || || || | ||| || Sbjct 28139204 CCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGGAA 28139263 Query 50199 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258 |||| | || || | ||||| | || || |||| | || || ||||| || Sbjct 28139264 GAGACGGGACTTCTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTC 28139323 Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 50318 || || ||||| ||||| || ||||| || |||||||| | ||||| | | ||| Sbjct 28139324 GGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTG 28139383 Query 50319 CACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 50378 || || | || | | | || | ||| || || || ||||| ||| || || Sbjct 28139384 GACCTCCTTCATGAACCTTCCGGCAAGATTCTCGAGTACGATGCCGTCGGAGGCGGCGAA 28139443 Query 50379 AAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAAT--CA 50436 || || | || || | || || || || ||| ||| ||||| | | ||| | | Sbjct 28139444 GAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGGCG 28139503 Query 50437 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 50496 || |||| | | ||| || || || | ||||| || || ||||| ||||| || Sbjct 28139504 CTG--GTCTTGATCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTG 28139561 Query 50497 TACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 ||||| | |||||| || | ||||| || ||||| || Sbjct 28139562 TACATCTCCCAGATCTCCGGGTATTGAATCGGGAACAT 28139599 >seq1 Length=22681039 Score = 120 bits (132), Expect = 4e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 80088 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 80147 |||| ||| |||||||| | || | || || | |||| |||||| || ||| ||||| Sbjct 15714599 TTTGCCTCCCCCCTGATCAACATAACGGGCAGTATCATTAAAAACTCGCAGCATAGGAAT 15714540 Query 80148 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 80207 || ||||||||||| ||||| || || ||||| || ||| |||||||||| || Sbjct 15714539 GATGCCATTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGAATGTTGTG 15714480 Query 80208 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 80267 || || | ||| |||||||| || ||| ||| | || ||| || || ||||| Sbjct 15714479 AACAGAGACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTCAAGGTATC 15714420 Query 80268 ATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||| ||||| || ||||||||||| ||||| | || || |||||| Sbjct 15714419 ATATATGCCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 15714371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718241433958720