Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq4 109 4e-19 seq6 89.7 4e-13 seq3 84.2 2e-11 seq5 82.4 6e-11 >seq4 Length=23292877 Score = 109 bits (120), Expect = 4e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || || ||||||| || | ||| ||||||||| | |||||||| | Sbjct 15563270 CCTCCCCTGAGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGCA 15563329 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||| ||| ||||| ||||| |||| || ||||||||| | || Sbjct 15563330 AGAGTTCTGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGG 15563389 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| ||||||| || | | || || | | |||||| Sbjct 15563390 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCACTACTCTCGACC 15563449 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 || | || || || || ||||| ||||||||||| ||||||||||| || || Sbjct 15563450 TCAATAGTGATGGTCTTCCCGGTCAGAGTTTTCACGAAAATTTGCATATTGTT 15563502 >seq6 Length=38222195 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| ||| |||||| || | ||||||||||| ||| || || | || || Sbjct 34520067 CACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCGGCCAAAGTTCGGCCATCCTC 34520126 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||| || || ||||| || ||||| | ||| || || | || | || || || || Sbjct 34520127 CAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTG 34520186 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| | ||||| || ||| || || ||| |||||| || | || || || | Sbjct 34520187 GATCTTGGCCTTGACGTTGTCAATGGTATC-AGAGCTCTCGACCTCGAGAGTGATCGTCT 34520245 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||||||| ||||| || || || ||||| Sbjct 34520246 TCCCGGTTAGGGTTTTGACGAAGATCTGCAT 34520276 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| || | || |||||| || | ||||||||||| || || | |||| || Sbjct 34537741 CACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGCCAGGGTCCTGCCGTCCTC 34537800 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||| || || |||||||| ||||||| ||| ||||| | || | || || || || Sbjct 34537801 CAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCCGGGGGAATTCCCTCCTTATCCTG 34537860 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| | ||||| || ||| |||||| ||| ||| || || | || || || | Sbjct 34537861 GATCTTAGCCTTGACGTTGTCAATCGTGTCG-GAGCTCTCAACCTCGAGAGTGATGGTCT 34537919 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | ||||| || || ||||| || || ||||| Sbjct 34537920 TCCCGGTAAGGGTCTTCACGAAGATCTGCAT 34537950 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| || |||||| || | |||||||| | ||| || | |||| || Sbjct 34537969 CACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGCCAAGGTCCTACCGTCCTC 34538028 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTT-CTTTTTCGC 43018 | || || ||||| || ||||| | ||| ||||| | || | |||| | || || Sbjct 34538029 GAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATCCCTTCCCTTGTCCT 34538088 Query 43019 TGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTT 43077 |||| | ||||| || | | |||||| ||| |||||| || | || || || Sbjct 34538089 GGATCTTGGCCTTGACGTTGTCGATGGTGTCG-GAGCTCTCGACCTCGAGAGTGATCGTC 34538147 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||||||||| |||||||| || || ||||| Sbjct 34538148 TTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 34538179 >seq3 Length=27879571 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | ||||||||||| || |||||| || | |||||||| | Sbjct 183779 CCACCACGCAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCA 183720 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | || ||||| ||||| |||| ||||| || || | || Sbjct 183719 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGG 183660 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| || | || || || ||| ||||| || ||| || Sbjct 183659 ATTCCCTCCTTGTC-CTGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCAC 183601 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || ||||| || |||||||| ||||||||||| Sbjct 183600 CTCAAGGGTGATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 183553 >seq5 Length=29328693 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||| ||||||| ||| ||||| | || ||||| || || ||||| || Sbjct 19804623 CTCCTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAA 19804564 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACT---CTTTGAC 43034 ||||| | || ||||| | ||| | ||| || || || ||| | || ||||||| Sbjct 19804563 GATCAACCTTTGCTGATCCGGCGGGATACCCTCCTTATCT-TGAAC--CTTGGCTTTGAC 19804507 Query 43035 TCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTT 43093 || ||| || ||| ||| ||| || || | || || || || || || | ||| | Sbjct 19804506 ATTGTCAATGGTATCGG-AGCTCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAAGTCT 19804448 Query 43094 TCACAAAAATTTGCAT 43109 |||||||||| ||||| Sbjct 19804447 TCACAAAAATCTGCAT 19804432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381355433072784