Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq4 113 4e-20 seq2 96.9 3e-15 seq3 93.3 4e-14 seq6 89.7 4e-13 >seq4 Length=23292877 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | | ||| ||||||| ||| | || ||||||||||| || |||||||||| Sbjct 15563268 TTCCTCCCCTGAGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCG 15563327 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| || | || ||||| || || || ||| | || |||||||| ||||| | Sbjct 15563328 CAAGAGTTCTGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAG 15563387 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||| |||||||| || || ||| || | | ||| ||||| | | ||| Sbjct 15563388 GGATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCACTACTCTCGA 15563447 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | || ||||| || || || | |||||| || ||||||||||| || Sbjct 15563448 CCTCAATAGTGATGGTCTTCCCGGTCAGAGTTTTCACGAAAATTTGCATATT 15563499 >seq2 Length=33308843 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| ||||| ||||||||||| ||||| || || | ||| | |||||||| Sbjct 6938851 ACCAAGTGCAAGGTAGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCC 6938910 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 | ||||||||| ||| | || || ||||||||||| ||| | ||||| ||||| Sbjct 6938911 AACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTC 6938966 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || |||| | | ||||| ||| | |||||||||||||| ||||||||||| | Sbjct 6939059 TTCCACCACGCAGACGGAGCACCAGGTGAAGAGTAGACTCCTTTTGGATATTGTAATCGG 6939118 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||| |||||||| || ||| | || || ||||||||||| || Sbjct 6939119 CAAGGGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGG 6939178 Query 18933 GCACGCCCTCTTTGTC 18948 | | |||||| ||||| Sbjct 6939179 GTATGCCCTCCTTGTC 6939194 >seq3 Length=27879571 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || || ||||||||||| ||||| || || | ||| | |||||||| Sbjct 13774892 ACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCC 13774833 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 | ||||||||| ||| | || || ||||||||||| ||| | ||||| ||||| Sbjct 13774832 AACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTC 13774777 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | |||||| ||||| | ||| | || ||||| ||||| ||||| ||||| | Sbjct 9477436 TTCCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAATCTG 9477495 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | ||| | || |||| ||| ||||| ||| |||| |||||||||||||| | Sbjct 9477496 CAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCTGGAG 9477555 Query 18933 GCACGCCCTCTTTGTC 18948 | | ||| || ||||| Sbjct 9477556 GGATGCCTTCCTTGTC 9477571 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || ||||||||||||||||| || || || | ||| | | ||||| Sbjct 13657117 CACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTGCAAGTGTCCTTCCATCCTC 13657058 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| |||| | |||||||| || || | ||||| || || Sbjct 13657057 AAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGAGGAATACCCTCCTTATCCTG 13656998 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGT 19008 |||||| ||| || | | | || | ||| || ||| ||| | || ||||| Sbjct 13656997 AATTTTAGCTTTCACATTATCTATGGT---GTCAGAGCTTTCCACTTCCAAAGTGATGGT 13656941 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || | || |||||||| |||||||| Sbjct 13656940 TTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 13656908 >seq6 Length=38222195 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || ||||||||||| |||| || || ||||||| Sbjct 34537741 CACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGCCAGGGTCCTGCCGTCCTC 34537800 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 || ||| ||||| ||| | || | ||||||||||||| ||| | ||||| || || Sbjct 34537801 CAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCCGGGGGAATTCCCTCCTTATC 34537857 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||| || || | || | ||||||| Sbjct 34520295 CACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTC 34520354 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || || | || || |||||||| || || | |||||| ||||| Sbjct 34520355 AAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTG 34520414 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | |||| || ||| ||| |||| ||| ||||| || Sbjct 34520415 GATCTTGGCCTTGACGTTGTCGACGGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTCTT 34520474 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| ||||| |||||||||||||| Sbjct 34520475 GCCGGTTAGGGTTTTCACAAAAATTTGCAT 34520504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414557399656912