Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 3e-13 seq2 86.0 4e-12 >seq6 Length=38222195 Score = 89.7 bits (98), Expect = 3e-13 Identities = 153/217 (71%), Gaps = 14/217 (6%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT--TG--GT 33215 ||||||||||| |||||||| || || ||||||||||| | ||| |||| || | Sbjct 34519839 CACCAAATGCAGAGTCGACTCCTTCTGGATATTGTAATCCG-CAA---GAGTCCTGCCAT 34519894 Query 33216 CATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTT 33275 | ||||||||||| ||| || || || | ||||| |||| || || ||||| || | Sbjct 34519895 CCTCCAATTGCTTACCAGCGAAAATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTAT 34519954 Query 33276 C---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 | | | | ||| || || | | |||||||||| | | ||| || ||||| | Sbjct 34519955 CCTGGATCTTGGCC---TTGACGTTATCAATCGTGTCGGAGCTCTCAACTTCGAGAGTGA 34520011 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || ||||| || ||||| |||||||| Sbjct 34520012 TTGTCTTCCCGGTGAGAGTCTTCACGAAGATTTGCAT 34520048 >seq2 Length=33308843 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/215 (70%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG--GTCA 33217 ||||||||||| ||||||||||| || || |||||||| | | | || || ||| Sbjct 6938622 CACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC--AGTGTCCTGCCGTCC 6938679 Query 33218 TCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCG 33277 || | |||||||| ||| || | | |||||||| | ||| ||||||||||| || Sbjct 6938680 TCAAGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 6938739 Query 33278 CTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 |||| ||| || || | | ||| ||||| | || || |||| ||| || Sbjct 6938740 TGAATCTTTGCC---TTGACGTTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATG 6938796 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || | ||| || || ||||||||||| Sbjct 6938797 GTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 6938831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318765758209104