Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq5 100 2e-16 seq3 98.7 7e-16 seq2 98.7 7e-16 seq6 93.3 3e-14 >seq5 Length=29328693 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| || || |||||||||||| || ||| |||| ||||| || ||||| || || Sbjct 19804623 CTCCTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAA 19804564 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||||| |||||| ||| | || | ||| || |||||| || || |||||| | Sbjct 19804563 GATCAACCTTTGCTGATCCGGCGGGATACCCTCCTTATCTTGAACCTTGGCTTTGACATT 19804504 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||||| | |||||| || | || || || || || || ||||||||||| Sbjct 19804503 GTCAATGGTATCGGAGCTCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAAGTCTTCAC 19804444 Query 44110 AAATATTTGCATG 44122 ||| || |||||| Sbjct 19804443 AAAAATCTGCATG 19804431 >seq3 Length=27879571 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/194 (72%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| || |||||||||||| || ||| |||| ||||| || ||||| || || Sbjct 6885900 CTCTTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAA 6885841 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||||| |||||| ||| | || | ||| || |||||| ||| || ||||||| | Sbjct 6885840 GATCAACCTTTGCTGATCCGGCGGGATACCCTCCTTATCTTGAATCTTGGGTTTGACATT 6885781 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT-TAAAGTCTTCA 44108 ||| ||||| | ||| || |||| || || || || | || |||||||||| Sbjct 6885780 GTCAATGGTATCAGAGCTCTCTACCTCGAGGGTGATGGTCTTGCAAGTCAAAAGTCTTCA 6885721 Query 44109 CAAATATTTGCATG 44122 |||| | |||||| Sbjct 6885720 CAAAAACCTGCATG 6885707 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT-CATCGT 43970 |||||| || || ||| ||| |||||||||||||| || | || || | | |||| | Sbjct 13657117 CACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTC-TGCAAGTGTCCTTCCATCCT 13657059 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 | | || || |||||||| ||||||| |||||||| |||| | ||| || ||||| Sbjct 13657058 CAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGAGGAATACCCTCCTTATCCT 13656999 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 |||||| ||| || || | | || || | ||||| || | || || |||| Sbjct 13656998 GAATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGGTTT 13656939 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | ||||| | ||||| ||||| ||||||||| Sbjct 13656938 TGCCGGTAAGGGTCTTGACAAAGATTTGCATG 13656907 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT--CATCG 43969 ||||||||| || || ||| || || || || ||||| | | || | || |||| Sbjct 13775121 CACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATC-TGCCAGTGTC-CTACCATCC 13775064 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | || ||||||||||| || | || |||||||| | || | |||||||| || Sbjct 13775063 TCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 13775004 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| ||| ||||| || ||| || |||| ||||| || | ||||| ||| Sbjct 13775003 TGAATCTTTGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATAGTT 13774944 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || |||||||||||||| |||||||| Sbjct 13774943 TTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 13774912 >seq2 Length=33308843 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT--CATCG 43969 ||||||||| || || |||||| ||||| || ||||| | | || | || | || Sbjct 6938622 CACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATC-TGCCAGTGTC-CTGCCGTCC 6938679 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | || ||||||||||| || | || |||||||| | || | |||||||| || Sbjct 6938680 TCAAGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 6938739 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||| ||| ||||| || ||| || |||| ||||| || | ||||| ||| Sbjct 6938740 TGAATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATGGTT 6938799 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||| |||||||||||||| |||||||| Sbjct 6938800 TTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 6938831 >seq6 Length=38222195 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || ||| ||| || || ||||| ||||| | ||| |||| || Sbjct 34537286 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTACGACCATCCTCG 34537345 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | || || |||||||| ||||||| ||||||||| | || | |||||| ||||| Sbjct 34537346 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGG 34537405 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || |||||| || | | ||||||| |||||| || | || || || || Sbjct 34537406 ATCTTGGCTTTGACATTATCGATGGTATCTGAACTCTCCACCTCCAAAGTGATGGTCTTT 34537465 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||||||||| || ||||| Sbjct 34537466 CCTGTCAAAGTCTTCACAAAGATCTGCAT 34537494 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGT 43970 |||||| || || ||| ||| || || ||||| ||||| | | | || |||| | Sbjct 34537513 CACCAAGTGCAGGGTGGACTCCTTCTGGATATTGTAATCCGCAAGAGTCCTGC-CATCCT 34537571 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 ||||||| ||||| || || ||||||| ||||| ||| | || | ||||| ||||| Sbjct 34537572 CCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCCT 34537631 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 || || ||||| || ||| ||||| | ||| || || | ||||| || | Sbjct 34537632 GGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCAACCTCCAGGGTAATGGTCT 34537691 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || |||||||||||||| || ||||| Sbjct 34537692 TCCCTGTCAAAGTCTTCACAAAAATCTGCAT 34537722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354764420899104