Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 8e-16 seq3 98.7 8e-16 >seq6 Length=38222195 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/215 (72%), Gaps = 9/215 (4%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCC 48574 ||| ||||| || || |||||| || ||||||||||||||||| ||| || ||||| Sbjct 34537969 CACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGCCAA-GGTC-CTACCGTCC 34538026 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCA-CACTTTCCTTGTC 48633 || |||||||| ||| || | || || | ||||||||| || | | ||| ||||||| Sbjct 34538027 TCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATCCCTTCCCTTGTC 34538086 Query 48634 CATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 | || || ||||| | | || ||||| |||| ||| ||||| || || Sbjct 34538087 CTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTCGACCTCGAGAGTGATC 34538144 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || |||||||| || |||||||| Sbjct 34538145 GTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 34538179 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 48537 CCTTT-TGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| || ||||| || ||||||| |||||||| ||| || | Sbjct 22063132 CCTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 22063073 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | |||||||||||| || | | ||||||||| || || ||||| | Sbjct 22063072 ATGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 22063013 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| ||| | |||| ||||| || ||||| || || || || |||||||| Sbjct 22063012 TCGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACG 22062953 Query 48716 AAAATCTGCATC 48727 || ||||||||| Sbjct 22062952 AATATCTGCATC 22062941 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| ||||||||||||||||||| || ||||||| Sbjct 34519612 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTACGACCGTCCTCG 34519671 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| | | || || | ||||| ||| || | | |||||| ||| Sbjct 34519672 AGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGGATCCCTTCCTTATCCTGG 34519731 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || |||| | | |||||||| | ||| ||| | || ||||| || Sbjct 34519732 ATCTTGGCTTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAAAGTGATGGTCTTG 34519791 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || | ||| |||||||||||||||||| Sbjct 34519792 CCTGTCAAAGTCTTCACAAAAATCTGCATC 34519821 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| || || ||||||||||||| || | ||||| Sbjct 34537286 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTACGACCATCCTCG 34537345 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || | | || || | |||||| ||| || | || |||||| ||| Sbjct 34537346 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGG 34537405 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || |||| | | |||||||| | | |||| ||| | || ||||| || Sbjct 34537406 ATCTTGGCTTTGACATTATCGATGGTATCTGAACTCTCCACCTCCAAAGTGATGGTCTTT 34537465 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || | ||| |||||||| ||||||||| Sbjct 34537466 CCTGTCAAAGTCTTCACAAAGATCTGCATC 34537495 >seq3 Length=27879571 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| ||||| || || |||||| || |||||||||||||| Sbjct 183780 ACCACCACGCAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGC 183721 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | ||| | ||||| |||||||| || | | || | ||||||||| ||| || Sbjct 183720 AAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGG 183661 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| ||| || ||| | | ||||| || | ||||||| Sbjct 183660 GATTCCCTCCTTGTCCTGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCAC 183601 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || || || || |||||||| |||||||| ||||| |||||| Sbjct 183600 CTCAAGGGTGATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCATC 183552 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 |||||||||||| ||| |||||||||||||||||||||||||| || | ||||| Sbjct 13656661 CACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTC 13656602 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || | | || | | |||||| || || | || || || ||| Sbjct 13656601 AAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTG 13656542 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||| | | ||||| || | | ||| ||| | ||||||||||| Sbjct 13656541 AATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTT 13656482 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| |||||||| || ||||| Sbjct 13656481 CCCAGTGAGAGTCTTCACAAAGATTTGCAT 13656452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421235551571048