Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq6 118 6e-22 seq5 109 3e-19 seq2 109 3e-19 seq1 102 4e-17 seq3 100 1e-16 >seq6 Length=38222195 Score = 118 bits (130), Expect = 6e-22 Identities = 95/114 (83%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 11431 ATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 ||| | |||||| |||| | ||||||||||||| | | |||||||| ||||||||||| Sbjct 35282949 ATAAAAAATTAAATAAAATTAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG 35282890 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC-GTCGACGATTGTGA 11543 |||||||||||||||||| |||| |||||||||| |||| | || || ||||| Sbjct 35282889 TTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCACTTGATGACTGTGA 35282836 Score = 105 bits (116), Expect = 3e-18 Identities = 85/104 (82%), Gaps = 6/104 (6%) Strand=Plus/Minus Query 11433 ATAGAATTAATAAAAAATCAAA------TTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 |||| |||| ||||||| || |||||||||| | | |||||||| ||||||| Sbjct 30556754 ATAGTTTTAACAAAAAATTAATAATTAGTTGGCCCATGCAGGTCTCGAACCTGCGACCTT 30556695 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||||| |||| |||||||||| ||||| Sbjct 30556694 CGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCCG 30556651 Score = 102 bits (112), Expect = 4e-17 Identities = 77/91 (85%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| || |||||||| | | |||||||| |||||||||||||||||||| Sbjct 30827655 AATAAAAAAACA---TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCAC 30827599 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||| |||| |||||||||| |||||| Sbjct 30827598 GACGCTCTAACCAGCTGAGCTAATAGGCCGT 30827568 >seq5 Length=29328693 Score = 109 bits (120), Expect = 3e-19 Identities = 78/89 (88%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| |||| ||||| |||||||| | | |||||||| ||||||||||||||||||||| Sbjct 1476131 AATAGAAAAACAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 1476189 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 1476190 GACGCTCTAACCAGCTGAGCTAATAGGCC 1476218 Score = 109 bits (120), Expect = 3e-19 Identities = 78/89 (88%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| || |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 8138359 AAAAAAAAATTAA-TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 8138417 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 8138418 GACGCTCTAACCAGCTGAGCTAATAGGCC 8138446 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | |||||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 26393526 AAAACAAAAAATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 26393467 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 26393466 GCTCTAACCAGCTGAGCTAATAGGCC 26393441 Score = 95.1 bits (104), Expect = 6e-15 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||| | | |||||||| |||||||||||||||||||||||||||| || Sbjct 7396783 AAAGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 7396842 Query 11512 CAACTGAGCTAATGGGCCG 11530 || |||||||||| ||||| Sbjct 7396843 CAGCTGAGCTAATAGGCCG 7396861 >seq2 Length=33308843 Score = 109 bits (120), Expect = 3e-19 Identities = 87/103 (84%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 11427 GGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||||| || |||| || | |||| || |||||||||| | | |||||||| ||||||| Sbjct 33228807 GGAAAAAT-GAATAAAGATAAAAACAT-TTGGCCCATGCAGGTCTCGAACCTGCGACCTT 33228750 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| |||| |||||||||| |||| Sbjct 33228749 CGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 33228707 Score = 107 bits (118), Expect = 1e-18 Identities = 85/101 (84%), Gaps = 5/101 (5%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 11736281 AATAAAAAA---AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 11736225 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC--GTCGACGATT 11539 |||||||| |||| |||||||||| |||| || ||| ||| Sbjct 11736224 GACGCTCTAACCAGCTGAGCTAATAGGCCATGTTGACAATT 11736184 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| |||||||| | | |||||||| |||||||||||||||||||||||||||| || Sbjct 19248602 AAAGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 19248543 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 19248542 CAGCTGAGCTAATAGGCC 19248525 >seq1 Length=22681039 Score = 102 bits (112), Expect = 4e-17 Identities = 83/100 (83%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 ||| ||||| |||||| | || ||||||||| | | |||||||| |||||||||| Sbjct 8090690 AATTTAGAAA-AATAAACTAATAATGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGC 8090632 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| |||| |||||||||| |||| Sbjct 8090631 GTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 8090592 Score = 95.1 bits (104), Expect = 6e-15 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||||||||||| | | |||||||| ||||||||||||||||||||| || Sbjct 8402516 AAAAAT--AATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGGCG 8402459 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 8402458 CTCTAACCAGCTGAGCTAATAGGCC 8402434 >seq3 Length=27879571 Score = 100 bits (110), Expect = 1e-16 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 1302028 AAAAAAACAC--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 1301971 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 1301970 GCTCTAACCAGCTGAGCTAATAGGCC 1301945 Score = 95.1 bits (104), Expect = 6e-15 Identities = 82/102 (80%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||||| || | | ||||| || |||||||| | | |||||||| ||||||| Sbjct 7665552 GAAATATGTAAAAAGTTAAAAA---AAGTGGCCCATACAGGTCTCGAACCTGTGACCTTC 7665496 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||| |||||||||| |||| Sbjct 7665495 GCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 7665454 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261481486255648