Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3 154 2e-33 seq7 122 1e-23 seq6 98.7 2e-16 >seq3 Length=27879571 Score = 154 bits (170), Expect = 2e-33 Identities = 183/248 (74%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || |||||||| || ||||||||||| || || || ||| ||||||| | || Sbjct 17913127 TCTCCGGGACAACATCCAGGGCATCACCAAGCCCGCCATTCGCCGTTTGGCTCGCAGAGG 17913186 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||||||| ||||||| | |||||||||||| | | ||| | |||||||| Sbjct 17913187 CGGTGTCAAGCGTATCTCTGGTCTCATCTATGAAGAGACCAGAGGTGTCCTCAAGATCTT 17913246 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || ||| ||| |||| ||| || || ||||| ||||||||| | ||||| || Sbjct 17913247 TCTAGAGAACGTCATCCGTGACGCCGTCACTTATACTGAGCACGCTCGCAGGAAGACCGT 17913306 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| ||||||| |||||||||| ||||| | || || | | | ||||| ||||| Sbjct 17913307 CACCGCCATGGACGTCGTCTATGCTTTGAAGAGACAGGGAAGGACCCTCTATGGATTTGG 17913366 Query 16693 AAGTTAAT 16700 |||||| Sbjct 17913367 GGGTTAAT 17913374 Score = 152 bits (168), Expect = 8e-33 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| || || || ||||| ||||| ||||| || ||| Sbjct 18050329 GATAACATCCAGGGCATCACCAAGCCCGCCATTCGCCGTCTCGCTCGCCGTGGCGGCGTC 18050270 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| || | |||| || |||| ||||| ||| | ||||| |||||| || Sbjct 18050269 AAGCGTATCTCCGGTCTCATCTACGAGGAGACTCGTGGTGTCCTCAAGATATTCCTCGAG 18050210 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| ||| | || || |||||||| | ||||| |||||| || Sbjct 18050209 AACGTCATCCGTGACGCTGTTACTTACACTGAGCACGCCCGCAGGAAGACCGTCACCGCC 18050150 Query 16640 ATGGATATCGTCTATGC 16656 |||||| |||||||||| Sbjct 18050149 ATGGATGTCGTCTATGC 18050133 Score = 152 bits (168), Expect = 8e-33 Identities = 182/247 (74%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || |||||||| || ||||||||||| || || || ||| ||||||| | || Sbjct 18081993 TCTCCGGGACAACATCCAGGGCATCACCAAGCCCGCCATTCGCCGTTTGGCTCGCAGAGG 18081934 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||||||| ||||||| | |||||||||||| | | ||| | |||||||| Sbjct 18081933 CGGCGTCAAGCGTATCTCTGGTCTCATCTATGAAGAGACCAGAGGTGTCCTCAAGATCTT 18081874 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| |||| ||| || || || || ||||||||| | ||||| || Sbjct 18081873 TCTCGAGAACGTCATCCGTGACGCCGTCACTTACACTGAGCACGCTCGCAGGAAGACCGT 18081814 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| |||||||| | |||||||| ||||| | || || | | | ||||| ||||| Sbjct 18081813 CACCGCCATGGATGTTGTCTATGCTTTGAAGAGGCAGGGAAGGACTCTCTATGGATTTGG 18081754 Query 16693 AAGTTAA 16699 ||||| Sbjct 18081753 GGGTTAA 18081747 Score = 147 bits (162), Expect = 3e-31 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| ||||| || ||| ||||||| | || || ||| Sbjct 18487488 GATAACATCCAGGGCATCACCAAGCCTGCTATTCGCCGTTTGGCTCGCAGAGGCGGCGTC 18487429 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| || | |||||||||||| | | || | ||||||||||| || Sbjct 18487428 AAGCGTATCTCCGGTCTCATCTATGAAGAGACCAGAGGCGTCCTCAAGATCTTCCTTGAG 18487369 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| || || ||| ||||||||||| | |||||||||||| || Sbjct 18487368 AACGTCATCCGTGACGCCGTCACCTACACCGAGCACGCCCGGAGGAAGACTGTCACCGCC 18487309 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||||| |||| ||||| | || | || || | | | |||||||| ||| |||| Sbjct 18487308 ATGGACGTCGTGTATGCTCTCAAGAGGCAGGGAAGGACCCTCTATGGTTTCGGAGGTTA 18487250 Score = 143 bits (158), Expect = 4e-30 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| || ||||| ||| ||||||| | || || ||| Sbjct 18072993 GATAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTTTGGCTCGCAGAGGCGGCGTC 18072934 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| || | |||| ||||||| | | || | |||||||| ||| || Sbjct 18072933 AAGCGTATCTCCGGTCTTATCTACGAAGAGACCAGAGGAGTCCTCAAGATCTTTCTCGAG 18072874 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| || || || |||||||||||| | ||||| |||||| || Sbjct 18072873 AACGTCATCCGTGACGCCGTCACTTACACCGAGCACGCTCGCAGGAAGACAGTCACCGCC 18072814 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | || ||||| ||||| | ||||| Sbjct 18072813 ATGGATGTTGTTTATGCTTTGAAGAGGCAAGG 18072782 Score = 136 bits (150), Expect = 6e-28 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||| ||||| || ||||| ||| ||||||| | || || ||| Sbjct 17909163 GATAACATCCAGGGCATCACTAAGCCCGCCATCCGCCGTTTGGCTCGCAGAGGCGGCGTC 17909222 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| || | |||||||||| | | | || | |||||||||||| | Sbjct 17909223 AAGCGTATCTCCGGTCTCATCTATGAAGAAACCAGAGGCGTCCTCAAGATCTTCCTCGAA 17909282 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| || || ||| || |||||||| | ||||| |||||| || Sbjct 17909283 AACGTCATCCGTGACGCCGTCACCTACACTGAGCACGCCCGGAGGAAGACCGTCACCGCC 17909342 Query 16640 ATGGATATCGTCTATGCATTGAA 16662 ||||| |||||||||| ||||| Sbjct 17909343 ATGGACGTCGTCTATGCTTTGAA 17909365 >seq7 Length=23403891 Score = 122 bits (134), Expect = 1e-23 Identities = 185/261 (71%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || || || |||| | || || || || || ||||| || ||||| ||||| || || Sbjct 15934129 GCGAAACGACACCGCAAGGTC-CTCCGCGACAATATCCAGGGCATCACTAAGCCGGCCAT 15934187 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| ||||||| | || |||||||||||| || ||| ||| | ||||| || | Sbjct 15934188 ACGTCGGTTGGCTCGCAGAGGAGGAGTCAAGCGTATCAGTGGCTTGATTTATGAGGAAAC 15934247 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| | ||||| || ||| ||| || ||| || || | ||| ||||| Sbjct 15934248 AAGAGGTGTGCTCAAGATATTTCTCGAGAATGTGATCAGAGACGCCGTGACCTACACCGA 15934307 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || |||||||| ||| |||||||| | || ||||| ||||| | || || Sbjct 15934308 GCACGCTCGCCGCAAGACTGTGACCGCCATGGATGTGGTGTATGCGTTGAAGAGGCAGGG 15934367 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 | | | | ||||| ||||| Sbjct 15934368 CAGGACTCTCTATGGGTTTGG 15934388 Score = 102 bits (112), Expect = 1e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || || || || || ||||| ||||| || || ||||| ||||||| | || Sbjct 15959139 CTCCGTGACAATATTCAGGGTATCACTAAGCCGGCCATACGTCGGTTGGCTCGCAGAGGA 15959080 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 |||||||||||| || ||| ||| | ||||| || | | | || | ||||| || Sbjct 15959079 GGAGTCAAGCGTATCAGTGGCTTGATTTATGAGGAAACAAGAGGGGTGCTCAAGATTTTT 15959020 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || ||| || || | ||| || ||||||||| || |||||||| Sbjct 15959019 CTTGAGAATGTGATCAGAGACGCCGTGACCTACACTGAGCACGCTCGCCGCAAGACTGTG 15958960 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| | || ||||| ||||| | |||||| | | | ||||| ||||| Sbjct 15958959 ACTGCCATGGATGTGGTGTATGCGTTGAAGAGGCAAGGCAGGACTCTGTATGGGTTTGG 15958901 >seq6 Length=38222195 Score = 98.7 bits (108), Expect = 2e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || || || ||||| ||||| ||||| Sbjct 9346517 CTCCGCGACAACATCCAGGGCATCACGAAGCCGGCCATACGCCGTCTCGCTCGCCGTGGC 9346576 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | || || | |||| || |||| |||| || | ||||||||| Sbjct 9346577 GGAGTGAAGAGGATCAGCGGCCTCATCTACGAGGAGACACGTGGCGTCCTCAAGATCTTC 9346636 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || |||| || || | || ||||||||||| | | ||||| || Sbjct 9346637 CTGGAGAATGTGATCCGCGACGCCGTGACGTACACCGAGCACGCCAGGAGAAAGACGGTG 9346696 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||||||| ||||||| || | || | |||||| Sbjct 9346697 ACGGCCATGGACGTCGTCTACGCGCTCAAGAGGCAAGGC 9346735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072413192264