Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq3048 578 1e-160 seq2823 370 3e-98 seq838 360 6e-95 seq929 347 3e-91 seq2704 187 7e-43 >seq3048 Length=155691 Score = 578 bits (640), Expect = 1e-160 Identities = 731/996 (73%), Gaps = 8/996 (1%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 |||||| | ||| | || || ||||| ||||| ||||| | || |||||||| || | Sbjct 1417 TTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1358 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| ||| | | || ||| || ||||| | || || || || ||||| Sbjct 1357 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCT 1298 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || ||| | |||||||||||| Sbjct 1297 CCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAAT 1238 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||||| || || | | || | || || ||||| |||||||||| || || Sbjct 1237 ATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATA 1178 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | || | ||||| |||||||||||||| || || ||| | || |||| Sbjct 1177 TGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTT 1118 Query 19590 TTCCACTTCTTAATAGGAGTAGCA-GC-ATACGCTGGTAGACAGTGGGAACTATCTTACA 19647 | ||||||||| | || ||||| || ||| | ||| | |||||||||| || | Sbjct 1117 CTACACTTCTTACTTGGTGTAGCTTGCTATATG--GGTCGTGAGTGGGAACTTAGTTTCC 1060 Query 19648 GATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTG 19707 | | || ||| | || ||||| || |||||| |||| || | |||| ||| || Sbjct 1059 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 1000 Query 19708 CTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGT 19766 |||| ||||| | | |||||| |||| ||||| || ||| ||| ||||||||||| || Sbjct 999 CTGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGA 941 Query 19767 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCAT 19826 |||||||||||||| ||||| ||| | ||||||||||| || ||||| ||||||||||| Sbjct 940 ATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCAC 881 Query 19827 CCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCAC 19886 || || |||||||| ||||| ||||| ||||| || || || || ||| ||||||||| Sbjct 880 CCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCAT 821 Query 19887 GGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTAT 19946 || |||||| || || | |||| |||||| || || ||| ||| || | Sbjct 820 GGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 761 Query 19947 GGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 20006 || || | ||||| ||||| ||||| || |||||||| || || || || || || ||| Sbjct 760 GGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTT 701 Query 20007 GGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTT 20066 || ||||||| || ||||||||| |||||| ||||||||||||||||| ||||| | Sbjct 700 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTA 641 Query 20067 GCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTC 20126 ||| ||| || || || || || ||| | ||| | | || ||| |||||||||||||| Sbjct 640 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTC 581 Query 20127 AACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCC 20185 ||| | ||||||||||| || || || || ||||||||| ||||| || |||| Sbjct 580 AACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAA-GGTCGTGTAATTAA 522 Query 20186 AACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAA 20245 || ||||||||| | | || | ||||| || || | ||||||||||| || || || Sbjct 521 TACTTGGGCTGATATTATCAACCGCGCTAATCTTGGTATGGAAGTTATGCATGAACGTAA 462 Query 20246 TGCTCATAACTTCCCACTTGATTTAGCTTCGGCTGA 20281 ||||||||| ||||| || || ||||| | | ||| Sbjct 461 TGCTCATAATTTCCCTCTAGACCTAGCTGCTGTTGA 426 >seq2823 Length=1025 Score = 370 bits (410), Expect = 3e-98 Identities = 423/563 (75%), Gaps = 4/563 (1%) Strand=Plus/Plus Query 19722 TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTT 19781 |||||| |||| ||||| || ||| ||| ||||||||||| || |||||||||||||| Sbjct 2 TACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTC 61 Query 19782 AACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCC-ACATGCT 19840 ||||| ||| | ||||||||||| || ||||| ||||||||||| || || | ||||||| Sbjct 62 AACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCTACATGCT 121 Query 19841 CGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTAC 19900 ||||| ||||| ||||| || || || || ||| ||||||||| || |||||| || Sbjct 122 AGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAAC 181 Query 19901 TTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGG 19960 || | |||| |||||| || || ||| ||| || | || || | ||||| Sbjct 182 CTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGG 241 Query 19961 GCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATT 20020 ||||| ||||| || |||||||| || || || || || || ||||| ||||||| || Sbjct 242 TCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTT 301 Query 20021 TCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGT 20080 ||||||||| |||||| ||||||||||||||||| ||||| | ||| ||| || || Sbjct 302 CCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGT 361 Query 20081 GGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTT 20140 || || || ||| | ||| | | || ||| ||||||||||||||||| | |||||||| Sbjct 362 AGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTT 421 Query 20141 TAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATG 20199 ||| || || || || ||||||||| ||||| || |||| || ||||||||| Sbjct 422 TAATTTCAATCAATCTGTAGTTGATAGTCAA-GGTCGTGTAATTAATACTTGGGCTGATA 480 Query 20200 TATTAAATAGAG-CTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTC 20258 | | || | | |||| || || | ||||||||||| || || ||||||||||| ||| Sbjct 481 TTATCAACCGCGACTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTC 540 Query 20259 CCACTTGATTTAGCTTCGGCTGA 20281 || || || ||||| | | ||| Sbjct 541 CCTCTAGACCTAGCTGCTGTTGA 563 >seq838 Length=1002 Score = 360 bits (398), Expect = 6e-95 Identities = 455/618 (74%), Gaps = 7/618 (1%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 |||||| | ||| | || || ||||| ||||| ||||| | || |||||||| || | Sbjct 618 TTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 559 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| ||| | | || ||| || ||||| | || || || || ||||| Sbjct 558 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCT 499 Query 19410 CCTGTAGATATAGATGGCATACGTG-AGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 19468 || |||||||| ||||| || |||| | || ||||| || || ||| | ||||||||||| Sbjct 498 CCGGTAGATATTGATGGTATTCGTGTAACCTGTTTCTGGATCTTTACTTTACGGAAACAA 439 Query 19469 TATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGAT 19528 ||||||||| || || | | || | || || ||||| |||||||||| || || Sbjct 438 TATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAAT 379 Query 19529 CTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 |||||||| | || | ||||| |||||||||||||| || || ||| | || |||| Sbjct 378 ATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGT 319 Query 19589 CTTCCACTTCTTAATAGGAGTAGCA-GC-ATACGCTGGTAGACAGTGGGAACTATCTTAC 19646 | ||||||||| | || ||||| || ||| | ||| | |||||||||| || | Sbjct 318 TCTACACTTCTTACTTGGTGTAGCTTGCTATATG--GGTCGTGAGTGGGAACTTAGTTTC 261 Query 19647 AGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTT 19706 | | || ||| | || ||||| || |||||| |||| || | |||| ||| | Sbjct 260 CGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 201 Query 19707 GCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGG 19765 ||||| ||||| | | |||||| |||| ||||| || ||| ||| ||||||||||| || Sbjct 200 GCTGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGG 142 Query 19766 TATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCA 19825 |||||||||||||| ||||| ||| | ||||||||||| || ||||| ||||||||||| Sbjct 141 AATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCA 82 Query 19826 TCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCA 19885 || || |||||||| ||||| ||||| ||||| || || || || ||| ||||||||| Sbjct 81 CCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCA 22 Query 19886 CGGAAGTTTGGTTACTTC 19903 || |||||| || || Sbjct 21 TGGTTCTTTGGTAACCTC 4 >seq929 Length=1222 Score = 347 bits (384), Expect = 3e-91 Identities = 435/589 (74%), Gaps = 7/589 (1%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 |||||| | ||| | || || ||||| ||||| ||||| | || |||||||| || | Sbjct 637 TTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 696 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTAT-ACTCGCCTTTATCGCAGCACC 19408 ||||| ||| ||| | | || ||| || ||||| | | || || || || ||||| Sbjct 697 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATTAGCTTTCATTGCTGCACC 756 Query 19409 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 19468 || |||||||| ||||| || ||||| || ||||| || || ||| | ||||||||||| Sbjct 757 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAA 816 Query 19469 TATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGAT 19528 ||||||||| || || | | || | || || ||||| |||||||||| || || Sbjct 817 TATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAAT 876 Query 19529 CTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 |||||||| | || | ||||| |||||||||||||| || || ||| | || |||| Sbjct 877 ATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGT 936 Query 19589 CTTCCACTTCTTAATAGGAGTAGC-AGC-ATACGCTGGTAGACAGTGGGAACTATCTTAC 19646 | ||||||||| | || ||||| || ||| | ||| | |||||||||| || | Sbjct 937 TCTACACTTCTTACTTGGTGTAGCTTGCTATATG--GGTCGTGAGTGGGAACTTAGTTTC 994 Query 19647 AGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTT 19706 | | || ||| | || ||||| || |||||| |||| || | |||| ||| | Sbjct 995 CGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 1054 Query 19707 GCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGG 19765 ||||| ||||| | | |||||| |||| ||||| || ||| ||| ||||||||||| || Sbjct 1055 GCTGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGG 1113 Query 19766 TATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCA 19825 |||||||||||||| ||||| ||| | ||||||||||| || ||||| ||||||||||| Sbjct 1114 AATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCA 1173 Query 19826 TCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTC 19874 || || |||||||| ||||| ||||| ||||| || || || || ||| Sbjct 1174 CCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTC 1222 >seq2704 Length=1012 Score = 187 bits (206), Expect = 7e-43 Identities = 235/323 (73%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 |||||| | ||| | || || ||||| ||||| ||||| | || |||||||| || | Sbjct 678 TTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 737 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| ||| | | || ||| || ||||| | || || || || ||||| Sbjct 738 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCT 797 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || ||||| || ||||| || || ||| | |||||||||||| Sbjct 798 CCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAAT 857 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||||| || || | | || | || || ||||| |||||||||| || || Sbjct 858 ATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATA 917 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | || | ||||| |||||||||||||| || || ||| | || |||| Sbjct 918 TGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTT 977 Query 19590 TTCCACTTCTTAATAGGAGTAGC 19612 | ||||||||| | || ||||| Sbjct 978 CTACACTTCTTACTTGGTGTAGC 1000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144436371936288