Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq3048 502 4e-137 seq2823 324 2e-83 seq838 306 6e-78 seq929 288 2e-72 seq2704 131 3e-25 >seq3048 Length=155691 Score = 502 bits (556), Expect = 4e-137 Identities = 677/943 (72%), Gaps = 0/943 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 |||| |||||||||||| | |||||||| | | | | ||||| | ||||| Sbjct 1377 TTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTA 1318 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 | || ||||| || |||||||| || ||||| || || || |||||||| || |||| | Sbjct 1317 TTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 1258 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | || | || || ||||| || || || ||||| || | || |||| || || | Sbjct 1257 CTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAG 1198 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||| ||||| || || || |||||||| || || ||||||| ||| | ||||| |||| Sbjct 1197 GTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTG 1138 Query 211850 GTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGAC 211909 | ||||| || | | | | |||||| | | || | | || ||||| | Sbjct 1137 GCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTG 1078 Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 ||||||||||| | |||| | |||||||| |||||||| |||||| |||||||| | Sbjct 1077 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 1018 Query 211970 CTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAG 212029 |||| |||| ||| ||||| ||| | | |||||| | ||||| || || || | Sbjct 1017 CTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTG 958 Query 212030 ACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAAC 212089 ||||||||||| |||| || || || || |||||||||||| | ||||||||||| || | Sbjct 957 ACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGC 898 Query 212090 ATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCAT 212149 | |||||||||||||||||||| || ||| |||||| || ||| | || || || | Sbjct 897 ACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCC 838 Query 212150 TATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTT 212209 ||||| ||||||||| |||||| | || || ||| | ||| | |||||||| | Sbjct 837 TATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAA 778 Query 212210 TAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTG 212269 || || || | ||||||| ||||| ||||| ||||| || ||||| ||||| | Sbjct 777 ATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAG 718 Query 212270 CTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAA 212329 | || ||||| || || || || | |||||||| ||||| |||||||| | Sbjct 717 CCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTT 658 Query 212330 GTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTA 212389 ||||||||||||| | || | |||||||| | || | ||||| ||| || | |||| Sbjct 657 CTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTA 598 Query 212390 TCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCAT 212449 || |||| ||||| |||||| ||||||| || || ||||| ||||| || |||||| Sbjct 597 TCAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTC 538 Query 212450 CAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAG 212509 |||| || || |||||||| |||| || | ||| | || || ||||||||||||| Sbjct 537 AAGGTCGTGTAATTAATACTTGGGCTGATATTATCAACCGCGCTAATCTTGGTATGGAAG 478 Query 212510 TTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||| ||| | ||||| || || ||||| || ||| |||| Sbjct 477 TTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 435 >seq2823 Length=1025 Score = 324 bits (358), Expect = 2e-83 Identities = 405/553 (73%), Gaps = 2/553 (0%) Strand=Plus/Plus Query 212002 TACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTC 212061 |||||| | ||||| || || || |||||||||||| |||| || || || || ||| Sbjct 2 TACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTC 61 Query 212062 AACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCC-ATATGGC 212120 ||||||||| | ||||||||||| || || |||||||||||||||||||| | | ||| Sbjct 62 AACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCTACATGCT 121 Query 212121 AGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTAC 212180 |||||| || ||| | || || || | ||||| ||||||||| |||||| | || || Sbjct 122 AGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAAC 181 Query 212181 ATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGG 212240 ||| | ||| | |||||||| | || || || | ||||||| ||||| Sbjct 182 CTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGG 241 Query 212241 ACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTT 212300 ||||| ||||| || ||||| ||||| || || ||||| || || || || | ||||| Sbjct 242 TCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTT 301 Query 212301 CCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGT 212360 ||| ||||| |||||||| | ||||||||||||| | || | |||||||| Sbjct 302 CCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGT 361 Query 212361 TATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATT 212420 | || | ||||| ||| || | |||||| |||| ||||| |||||| ||||||| || Sbjct 362 AGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTT 421 Query 212421 CAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGT 212480 || ||||| ||||| || |||||| |||| || || |||||||| |||| | Sbjct 422 TAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATAT 481 Query 212481 TCTTAACAGAG-CAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCC 212539 | | ||| | | | || |||||||||||||||||||| ||| | ||||| || || |||| Sbjct 482 TATCAACCGCGACTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCC 541 Query 212540 CACTTGACTTAGC 212552 | || ||| |||| Sbjct 542 CTCTAGACCTAGC 554 >seq838 Length=1002 Score = 306 bits (338), Expect = 6e-78 Identities = 414/576 (72%), Gaps = 1/576 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 |||| |||||||||||| | |||||||| | | | | ||||| | ||||| Sbjct 578 TTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTA 519 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTG-AACCAGTAGCTGGT 211728 | || ||||| || |||||||| || ||||| || || || |||| |||| || |||| Sbjct 518 TTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGTAACCTGTTTCTGGA 459 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || || | || || ||||| || || || ||||| || | || |||| || || Sbjct 458 TCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATA 399 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| ||||| || || || |||||||| || || ||||||| ||| | ||||| ||| Sbjct 398 GGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGT 339 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 || ||||| || | | | | |||||| | | || | | || ||||| | Sbjct 338 GGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGT 279 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | |||| | |||||||| |||||||| |||||| |||||||| Sbjct 278 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCT 219 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 ||||| |||| ||| ||||| ||| | | |||||| | ||||| || || || Sbjct 218 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCT 159 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 |||||||||||| |||| || || || || |||||||||||| | ||||||||||| || Sbjct 158 GACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAG 99 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || |||||||||||||||||||| || ||| |||||| || ||| | || || || | Sbjct 98 CACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCC 39 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCT 212184 ||||| ||||||||| |||||| | || || ||| Sbjct 38 CTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCT 3 >seq929 Length=1222 Score = 288 bits (318), Expect = 2e-72 Identities = 386/536 (72%), Gaps = 1/536 (0%) Strand=Plus/Plus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 |||| |||||||||||| | |||||||| | | | | ||||| | ||||| Sbjct 677 TTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTA 736 Query 211670 T-AGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | ||| ||||| || |||||||| || ||||| || || || |||||||| || |||| Sbjct 737 TTAGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGA 796 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || || | || || ||||| || || || ||||| || | || |||| || || Sbjct 797 TCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATA 856 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| ||||| || || || |||||||| || || ||||||| ||| | ||||| ||| Sbjct 857 GGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGT 916 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 || ||||| || | | | | |||||| | | || | | || ||||| | Sbjct 917 GGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGT 976 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | |||| | |||||||| |||||||| |||||| |||||||| Sbjct 977 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCT 1036 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 ||||| |||| ||| ||||| ||| | | |||||| | ||||| || || || Sbjct 1037 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCT 1096 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 |||||||||||| |||| || || || || |||||||||||| | ||||||||||| || Sbjct 1097 GACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAG 1156 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGG 212144 || |||||||||||||||||||| || ||| |||||| || ||| | || || || Sbjct 1157 CACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGG 1212 >seq2704 Length=1012 Score = 131 bits (144), Expect = 3e-25 Identities = 177/247 (72%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 |||| |||||||||||| | |||||||| | | | | ||||| | ||||| Sbjct 718 TTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTA 777 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 | || ||||| || |||||||| || ||||| || || || |||||||| || |||| | Sbjct 778 TTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 837 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | || | || || ||||| || || || ||||| || | || |||| || || | Sbjct 838 CTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAG 897 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||| ||||| || || || |||||||| || || ||||||| ||| | ||||| |||| Sbjct 898 GTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTG 957 Query 211850 GTCCTTA 211856 | ||||| Sbjct 958 GCCCTTA 964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807524432146880