Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 111 2e-19 seq1 98.7 1e-15 >seq6 Length=38222195 Score = 111 bits (122), Expect = 2e-19 Identities = 379/582 (65%), Gaps = 14/582 (2%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| |||||||| || || || |||| || | ||||| || || || || Sbjct 28139025 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 28139084 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| | || |||||||| ||||||||||| | ||| ||| || |||||| Sbjct 28139085 CCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAG 28139144 Query 33424 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCGCTGTCATG 33479 || ||||| || ||| || ||||| | | | ||| | || ||| || ||| Sbjct 28139145 ATCCCTTCCAC-GCAGGCGAAGGCCACGATCCGCTCCGCGAAAGTTTCGGAGCCGTC--- 28139200 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| || | ||||| | ||||| || || ||||| || || || | ||| Sbjct 28139201 GATCCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCG 28139260 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 |||||| | || || | ||||| | || || |||| | || || ||||| Sbjct 28139261 GAAGAGACGGGACTTCTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACAT 28139320 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 || || || ||||| ||||| || ||||| || |||||||| | ||||| | | Sbjct 28139321 CTCGGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGAC 28139380 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAA-ATTTTCATTCACTATTCCGTCACTGGCTG 33718 ||| || || | || | | ||||| ||| ||| || || || ||||| ||| | Sbjct 28139381 CTGGACCTC-CTTCATGAACCTTCCGGCAAGATTCTCGAGTACGATGCCGTCGGAGGCGG 28139439 Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT 33778 | || || || | || || | || || | || ||| | || ||||| | | ||| | Sbjct 28139440 CGAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGT 28139499 Query 33779 --CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 | || |||| | | ||| || || || | ||||| || || ||||| ||||| Sbjct 28139500 GGCGCTG--GTCTTGATCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTT 28139557 Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 || ||||| | |||||| || ||||| || ||||| || Sbjct 28139558 CTTGTACATCTCCCAGATCTCCGGGTATTGAATCGGGAACAT 28139599 >seq1 Length=22681039 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 63362 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63421 || |||| ||| |||||||| | || | || || | |||| |||||| || ||| || Sbjct 15714602 CCTTTTGCCTCCCCCCTGATCAACATAACGGGCAGTATCATTAAAAACTCGCAGCATAGG 15714543 Query 63422 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATT 63481 ||| || || || ||| | ||||| || || ||||| || ||| |||||||||| || Sbjct 15714542 AATGATGCCATTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGAATGTT 15714483 Query 63482 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63541 || || | ||| |||||||| || ||| ||| | || ||| || || || Sbjct 15714482 GTGAACAGAGACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTCAAGGT 15714423 Query 63542 GTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 ||||| || || || ||||||||||| ||||| | || || |||||| Sbjct 15714422 ATCATATATGCCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 15714371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622923465711680