Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4 136 3e-27 seq6 93.3 4e-14 seq3 93.3 4e-14 seq2 91.5 1e-13 seq5 82.4 7e-11 >seq4 Length=23292877 Score = 136 bits (150), Expect = 3e-27 Identities = 175/240 (73%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 |||||| |||||| | || || ||||| | || || || | || || || || ||||| Sbjct 15563503 AAACAATATGCAAATTTTCGTGAAAACTCTGACCGGGAAGACCATCACTATTGAGGTCGA 15563444 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | | || |||||||| | |||||| ||||| |||||||||||||| ||||| Sbjct 15563443 GAGTAGTGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCTCC 15563384 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 ||||||||||||||||| | | ||||||||||| ||||||| ||||| | || Sbjct 15563383 AGATCAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGCAGAACTCTTGCGGA 15563324 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG-ACTAT 24222 ||| ||||| ||||| || || || |||| | ||||| || | || ||||| ||||| Sbjct 15563323 TTACAACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTGAGGCTCAGGGGAGGAACTAT 15563264 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | || ||| |||| || ||| || | Sbjct 18773194 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTGGAGTCCTCC 18773253 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 18773254 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 18773313 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| || | | | | | || ||| || ||| Sbjct 18773314 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 18773373 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 18773374 ATCCAGAAGGAGTCGAC 18773390 >seq6 Length=38222195 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/143 (75%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || || |||||||| ||||| |||||||||||| |||||| | ||| |||||| | ||| Sbjct 19322131 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 19322072 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| |||| | ||||| ||||| ||||| || || || |||| |||| ||| Sbjct 19322071 GATGGAAGAACTCTTGCAGATTACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTA 19322012 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || |||| || || ||||| || Sbjct 19322011 AGGCTGAGGGGTGGAACTATGAT 19321989 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| |||| || |||| |||||| | | Sbjct 34538179 ATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACGATCACTCTCGAGGTCGAGAGCTCC 34538120 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAA-AGAAGGCATACCTCCCGATCA 24109 ||||||||||| | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 34538119 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGGAAGGGATCCCCCCAGATCA 34538060 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||| | || ||| ||||| ||||| || | || | | | ||||| || Sbjct 34538059 GCAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAGGACGGTAGGACCTTGGCTGATTACAA 34538000 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||| || || || || || | ||||| ||| Sbjct 34537999 CATCCAGAAGGAGTCAACCCTCCATTTGGTG 34537969 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | || || |||| || ||| | Sbjct 22062939 AAGATGCAGATATTCGTGAAAACCCTAACGGGGAAGACCATCACTCTCGAGGTGGAGAGC 22062998 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||||||||| | ||||| ||||| ||||| |||||||| ||||| ||| Sbjct 22062999 AGCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGAT 22063058 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | || || | || ||| ||||| ||||| || | | | | | | ||| || Sbjct 22063059 CAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGACTAC 22063118 Query 24168 AACATTCAAAAAG 24180 ||||| || |||| Sbjct 22063119 AACATCCAGAAAG 22063131 >seq3 Length=27879571 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/143 (75%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| |||||||| ||||| ||||| ||||||||||||| | || ||||| | ||| Sbjct 9477571 GACAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAA 9477512 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| ||| | | |||||||| || |||||||| || || | || | ||||| Sbjct 9477511 GATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTGTTG 9477452 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || ||||| ||||| ||||| || Sbjct 9477451 AGGTTGAGGGGAGGAACTATGAT 9477429 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| ||| | || ||| | || || ||| Sbjct 13656452 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 13656511 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||||| || ||||| || || || || || || Sbjct 13656512 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 13656571 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | || ||||| || || |||| | | | | | ||||| ||| Sbjct 13656572 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAAC 13656631 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| || || || ||||||||||| Sbjct 13656632 ATTCAAAAGGAGTCCACCCTTCATTTAGTG 13656661 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || || || || ||| | ||||| | ||||| || | Sbjct 13774911 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 13774970 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | ||||| ||||||| |||||||||||||| || || || || Sbjct 13774971 AGACACAATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 13775030 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACA-GAAAC-GTCAGCGATTAT 24167 ||||| || || | | || ||||| || || |||| | || || | || ||||| Sbjct 13775031 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGATGGTAGGACACTGGCA--GATTAC 13775088 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || || || || | ||||| ||| Sbjct 13775089 AACATACAGAAGGAGTCAACTCTGCATTTGGTG 13775121 >seq2 Length=33308843 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || || || || ||| | ||||| | ||||| || | Sbjct 6938832 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 6938773 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | ||||| ||||||| |||||||||||||| || || || || Sbjct 6938772 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 6938713 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACA-GAAAC-GTCAGCGATTAT 24167 ||||| || || | | || ||||| || || || | || || || | || ||||| Sbjct 6938712 GCAGAGGCTTATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCA--GATTAC 6938655 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| ||||| || || | ||||| ||| Sbjct 6938654 AACATTCAGAAAGAGTCGACTCTGCATTTGGTG 6938622 >seq5 Length=29328693 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | || ||| |||| || ||| | | Sbjct 21081046 ATGCAGATATTCGTGAAAACCCTAACGGGCAAGACCATCACCCTCGAGGTGGAGAGCTCC 21080987 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 21080986 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 21080927 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || |||||||| | || |||| | | | || ||||||||| Sbjct 21080926 CAGAGGCTCATCTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACTCTCGCAGATTATAAC 21080867 Query 24171 ATTCAAAAAGAATCTACA 24188 || || || || |||||| Sbjct 21080866 ATCCAGAAGGAGTCTACA 21080849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429920028952440