Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq4 102 7e-17 seq3 96.9 3e-15 seq2 96.9 3e-15 >seq4 Length=23292877 Score = 102 bits (112), Expect = 7e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||||||||| || ||||| || || || || ||||| || | || ||| Sbjct 15563499 AATATGCAAATTTTCGTGAAAACTCTGACCGGGAAGACCATCACTATTGAGGTCGAGAGT 15563440 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || || || | ||||| || ||| || || || ||||||||| |||| || Sbjct 15563439 AGTGATAC-CATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCTCCAGA 15563381 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||| || ||||| || | ||| ||||| ||| | ||||||| || ||| | || ||||| Sbjct 15563380 TCAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGCAGAACTCTTGCGGATTA 15563321 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||| ||||| ||||| ||| | || |||||||||| | | ||||||| Sbjct 15563320 CAACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTGAGGCTCAGGGGAGGAA 15563268 >seq3 Length=27879571 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 || || |||||| |||| |||||||| ||||| |||| ||| || || || || ||| Sbjct 9477571 GACAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAA 9477512 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| |||| | || |||||||| || ||||||||||| ||| | || | |||||| Sbjct 9477511 GATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTGTTG 9477452 Query 115499 AGATTGCGAGGAGGAA 115514 || ||| | ||||||| Sbjct 9477451 AGGTTGAGGGGAGGAA 9477436 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| || || ||||| || |||||||| ||| | || ||| Sbjct 13656452 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 13656511 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || ||| ||| |||||||| || |||| || || Sbjct 13656512 GACACCATTG-ACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCA 13656570 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||||| || | ||| || || || | || |||| | ||| |||| ||||| || Sbjct 13656571 GCAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAA 13656630 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||||||| ||||| || | ||| | ||| Sbjct 13656631 CATTCAAAAGGAGTCCACCCTTCATTTAGTG 13656661 >seq2 Length=33308843 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||||||||| || || | || || ||||||||||| | ||| ||| | Sbjct 6938832 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 6938773 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | || || ||| ||| || ||||||||| | ||| || || Sbjct 6938772 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 6938713 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || ||||| | ||| || || || | || || | || || |||| ||||| || Sbjct 6938712 GCAGAGGCTTATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 6938653 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 |||||| |||||||| ||| | ||| ||||| Sbjct 6938652 CATTCAGAAAGAGTCGACTCTGCATTTGGTG 6938622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425328199533760