Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq6 102 7e-17 seq4 102 7e-17 seq3 96.9 3e-15 seq2 95.1 1e-14 seq1 95.1 1e-14 >seq6 Length=38222195 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||||||||| | ||| | ||||| Sbjct 34520293 AGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCC 34520352 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | || |||| ||| ||||| ||| | |||||| ||||| Sbjct 34520353 TCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 34520412 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | || |||||| | ||| || | |||||||| Sbjct 34520413 TGGATCTTGGC--CTTGACGTTGTCGACGGTGTCGGAGCTCTCGACCTCGAGGGTGATGG 34520470 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || ||||| |||||||| ||||| Sbjct 34520471 TCTTGCCGGTTAGGGTTTTCACAAAAATTTGCAT 34520504 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||||||||||| || | ||||| Sbjct 34538196 AGCACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTCCGGCCGTCC 34538255 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | || |||| ||| ||||| ||| | |||||| ||||| Sbjct 34538256 TCGAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 34538315 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | |||||| | ||| || | |||||||| Sbjct 34538316 TGGATCTTGGC--CTTGACGTTGTCGATGGTGTCGGAGCTCTCAACCTCGAGGGTGATGG 34538373 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || |||||||| ||||| || || |||||||| Sbjct 34538374 TCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 34538407 >seq4 Length=23292877 Score = 102 bits (112), Expect = 7e-17 Identities = 164/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | ||||||| |||| || || || ||||||||||| |||||||| || || Sbjct 15563270 CCTCCCCTGAGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGCA 15563329 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | || |||| ||| ||||| ||| | || || | |||||| || ||| Sbjct 15563330 AGAGTTCTGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGG 15563389 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || ||| || || | | | | || || | ||| Sbjct 15563390 ATGCCTTCTTTGTCCTGGATCTTGGCT--TTGACATTGTCGATGGTATCACTACTCTCGA 15563447 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGT 16940 || | |||||||| || |||||||| ||||| || ||||| ||||| |||| Sbjct 15563448 CCTCAATAGTGATGGTCTTCCCGGTCAGAGTTTTCACGAAAATTTGCATATTGT 15563501 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || |||||||||||||| | ||| | ||||||| | || Sbjct 18773396 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 18773337 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || || ||||| |||||| || | |||||| ||||| || || Sbjct 18773336 TTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTG 18773277 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | |||||| || |||| || | ||||||||| || || | Sbjct 18773276 GC--CTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTTCCCCG 18773219 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || || |||||||| Sbjct 18773218 TTAGGGTTTTCACGAAGATCTGCAT 18773194 >seq3 Length=27879571 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||| ||||| || ||||||||||| |||| ||| | | ||| Sbjct 184220 AGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGGCCATCC 184161 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || ||| | ||||||| ||| ||||| || | ||||| ||||| Sbjct 184160 TCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 184101 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | ||||| | |||| |||| |||||||| Sbjct 184100 TGGATCTTGGC--CTTGACATTGTCAATGGTGTCAGAGCTCTCCACCTCCAAGGTGATGG 184043 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| |||| || ||||| || |||||||| Sbjct 184042 TCTTTCCTGTCAAGGTCTTGACGAAGATCTGCAT 184009 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || || |||||||| || | || ||||||| | || Sbjct 184439 TGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCAAGAGTACGCCCGTCCTCAAGCTGC 184380 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| ||| | ||||||| ||| ||||| || | ||||| ||||| ||| | Sbjct 184379 TTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTG 184320 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||||| | |||| || | ||||||||| || || || Sbjct 184319 GCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCAAGGGTGATGGTCTTCCCTGTA 184260 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||||||||||||||| Sbjct 184259 AGGGTCTTGACAAAAATCTGCAT 184237 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||||||||| || || ||||| || | || | | ||| Sbjct 13657119 AGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTGCAAGTGTCCTTCCATCC 13657060 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || ||| |||| | || ||| ||||| ||| | ||||| || || Sbjct 13657059 TCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGAGGAATACCCTCCTTATCC 13657000 Query 16844 GCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 ||||| ||| ||||| | | | ||||| | ||| ||||| ||||||| Sbjct 13656999 TGAATTTTAGCT--TTCACATTATCTATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGG 13656942 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || || |||||||| || ||||| Sbjct 13656941 TTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 13656908 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || || || |||| || || |||||||| ||||| ||||||||||| || Sbjct 13774454 CCACCACGGAGTCTAAGCACCAGGTGGAGGGTGGACTCTTTTTGAATGTTGTAGTCAGCA 13774395 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || ||||| ||| | || |||| || ||||| || Sbjct 13774394 AGTGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGG 13774335 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || ||||| ||| || | | | | |||||| | || Sbjct 13774334 ATTCCCTCCTTGTCTTGGATCTTTGC--CTTGACATTGTCAATAGTGTCAGAGCTTTCAA 13774277 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || || || || || ||||| ||||| |||||||| Sbjct 13774276 CCTCGAGGGTGATAGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 13774228 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || ||||| | || |||| |||||| || |||||||| ||||||||||| || || Sbjct 13775139 CCCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGC 13775080 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | | ||||| | || || || ||| | || |||| ||| ||||| || Sbjct 13775079 CAGTGTCCTACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGG 13775020 Query 16828 CACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| |||||||| || ||||| ||| || | | | ||||| | ||| Sbjct 13775019 AATGCCTTCTTTGTCCTGAATCTTTGC--CTTGACATTATCAATTGTGTCTGAGCTTTCC 13774962 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| || || ||||| || |||| || || ||||| || |||||| Sbjct 13774961 ACTTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCATT 13774911 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || || | ||| || |||||||||||||| |||||||| || ||| Sbjct 13656678 CCACCACGTAGACGAAGCACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCC 13656619 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || || || ||| | || || | ||| ||||| || Sbjct 13656618 AGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 13656559 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||| || || ||||| |||||| | | | | ||||| ||| Sbjct 13656558 ATACCCTCTTTATCCTGAATCTTTGC--CTTCACGTTGTCAATGGTGTCAGAACTCTCAA 13656501 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| |||||||| || || || || || ||||| || ||||| Sbjct 13656500 CCTCCAAGGTTATGGTTTTCCCAGTGAGAGTCTTCACAAAGATTTGCAT 13656452 >seq2 Length=33308843 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||| || || |||||||| ||||||||||| || | ||| | ||||| Sbjct 6938848 AGAACCAAGTGCAAGGTAGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCC 6938907 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| ||||| || ||| | || |||| ||| || || || | ||||| ||||| Sbjct 6938908 TCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCC 6938967 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | | || ||| | ||| |||| |||||| | Sbjct 6938968 TGGATTTTTGC--CTTGACATTGTCAATTGTATCGGAGCTTTCCACCTCCAAGGTGATTG 6939025 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | || || || ||||| || ||||| ||||||||| Sbjct 6939026 TCTTCCCAGTAAGCGTCTTTACAAAGATCTGCATT 6939060 >seq1 Length=22681039 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||||||||| | || | ||||| Sbjct 22555148 AGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCC 22555207 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || | || || ||||| |||||| || | |||||| ||||| Sbjct 22555208 TCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCT 22555267 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | |||||| || |||| |||| ||||| | Sbjct 22555268 TGGATCTTGGC--CTTCACATTATCGATGGTGTCGGAGGACTCCACCTCCAACGTGATCG 22555325 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || || || || ||||| || || |||||||| ||| Sbjct 22555326 TCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTG 22555363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405072951993520