Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq6 143 3e-29 seq7 93.3 5e-14 seq2 93.3 5e-14 seq3 84.2 2e-11 seq5 82.4 9e-11 >seq6 Length=38222195 Score = 143 bits (158), Expect = 3e-29 Identities = 512/788 (65%), Gaps = 13/788 (2%) Strand=Plus/Plus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-AAGACG 92982 |||||||| || || || ||||||||| ||||| ||||| ||||| || | ||| || Sbjct 28138857 CTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCG 28138916 Query 92983 TACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 || |||| |||||| | ||| || ||||| || |||| || | || |||| Sbjct 28138917 CAC-GGTAACGCGTCGCAGACGAACTCCTTCTCTATGTCAACCGCGTTCCGCACGATTGA 28138975 Query 93043 TATTACTCTACTATTTGGTGGTTTTTGTACGACATAATT-GTACATTAAGCACGCAAAGT 93101 | || | || | |||| || | || | ||| | | |||||| |||| Sbjct 28138976 CTTCACGCG-CTCCTCGGTGAGCTTCATCCGGAGGAGGGAGTAGAGAAGGCACGCGAAGT 28139034 Query 93102 CGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACA 93161 || || | ||||| ||||| || |||||||| || ||| || | ||| || | || Sbjct 28139035 CGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCA 28139094 Query 93162 GTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACCTTCC 93220 || || || || ||||||||||| | ||| || || || || || || || |||||| Sbjct 28139095 ACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTTCCCGAGAAGAAGATCCCTTCC 28139153 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280 ||| || || ||||| || || || || ||| || |||| | | ||||||||| Sbjct 28139154 ACGCAGGCGAAGGCCACGATCCGCTCCGCGAAAGTTTCGGA---GCCGTCGATCCATTTC 28139210 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG--CGTTAAATAGGT 93338 | ||||| | || |||||| | ||||| | || |||| | || | | | | Sbjct 28139211 AGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGGAAGAGACGG 28139270 Query 93339 AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398 | || ||||||||| ||| ||||| || |||| | || ||||| || || | Sbjct 28139271 GA-CT-TCTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTCGGAGT 28139328 Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458 ||| ||||| || || || ||||| |||||||| | || |||| || ||| || | Sbjct 28139329 GGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTGGACCT 28139388 Query 93459 CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaG 93518 | | || || | | ||||| || || || || ||||| || || || || | Sbjct 28139389 CCTTCATGAACCTTCCGGCAAGATTCTCGAGTACGATGCCGTCGGAGGCGGCGAAGAAGG 28139448 Query 93519 CCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGAT 93578 | | | || | || || || ||||| | | || | ||||| | | | | Sbjct 28139449 CGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGGCGCTGGT 28139508 Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 ||| |||||||| || ||| | ||||| ||||| || || || || |||||||| | Sbjct 28139509 CTTGATCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGTACATCT 28139568 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698 |||| || || | |||||||| || || ||| || || | ||||| | | || | Sbjct 28139569 CCCAGATCTCCGGGTATTGAATCGGGAACATGCAGAACCGGTCCGGGTTGGCCATCAGGA 28139628 Query 93699 ACGGCTCT 93706 ||||||| Sbjct 28139629 GCGGCTCT 28139636 >seq7 Length=23403891 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/98 (83%), Gaps = 7/98 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 4275351 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 4275294 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358 |||||||||| || ||||| ||||| ||||||||||| Sbjct 4275293 GCGTGGGTTCAAATCCCACTTCTGAC-AATTATTATTG 4275257 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 20925952 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 20926009 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| ||| || Sbjct 20926010 GGGTTCAAATCCCACAGCTGTCAATTT 20926036 >seq2 Length=33308843 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/97 (82%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 33071208 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGG 33071267 Query 126322 CGTGGGTTCGAACCCCACACCTGACA-AATTATTATT 126357 ||||||||| || ||||| |||||| || | ||||| Sbjct 33071268 CGTGGGTTCAAATCCCACTTCTGACATAAATTTTATT 33071304 Score = 82.4 bits (90), Expect = 9e-11 Identities = 85/108 (79%), Gaps = 10/108 (9%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 23237007 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 23237064 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||||||||| || ||||| |||||| | || ||| ||||||| || Sbjct 23237065 CGTGGGTTCAAATCCCACTTCTGACATA-TAATAT---AATTTTTTTT 23237108 >seq3 Length=27879571 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/102 (79%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 645046 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 645103 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||| || |||||| ||| ||| |||| || |||||| Sbjct 645104 GGGTTCAAATCCCACAGCTGTCAA--TATTTTTTTCATTTTT 645143 >seq5 Length=29328693 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| |||| ||||||||||| |||||||| | ||| |||||| | || || | || Sbjct 2051659 AGTCAGGATGGCGGAGTGGTCTAACGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 2051600 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||| || ||||| |||||||| Sbjct 2051599 GTGGGTTCAAATCCCACTTCTGACAAA 2051573 Score = 82.4 bits (90), Expect = 9e-11 Identities = 82/103 (80%), Gaps = 5/103 (5%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 3003098 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 3003155 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTG-GAATTTTTGTT 126369 ||| || |||||| ||| | ||| || ||| ||| |||||| Sbjct 3003156 TTCAAATCCCACAGCTGTC--ATTGTTTTTGCAAATCTTTGTT 3003196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556839583603520