Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 seq3 111 1e-19 seq4 96.9 3e-15 seq6 91.5 1e-13 >seq2 Length=33308843 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || ||||| | || || ||||| |||||||||||||| Sbjct 6938602 ATCCCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCT 6938661 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | || ||||| || || || || |||| || | ||| ||||| || Sbjct 6938662 GCCAGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGGTCTGGG 6938721 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| ||||||| || | | |||| ||||| | | ||| Sbjct 6938722 GGAATGCCTTCTTTGTCCTGAATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCC 6938781 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| ||||||| ||| || |||||||| ||||| Sbjct 6938782 ACTTCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 6938831 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||||||||||||||| || ||| | ||||||||| || |||||| Sbjct 6938407 GTCGACTCCTTTTGAATGTTGTAATCCGCCAGAGTCCTCCCATCTTCAAGCTGCTTACCA 6938466 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | ||||| | ||| ||||| |||||||||||||| ||||| ||||||| ||| Sbjct 6938467 GCAAATATGAGCCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGAATCTTTGCTTTC 6938526 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| || || | || || |||| ||| | || || || || || || Sbjct 6938527 ACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAGTAAGTGTC 6938586 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 6938587 TTCACAAAGATCTGCAT 6938603 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| || || | |||||||| |||||||||||||| || Sbjct 6938830 ATTCCACCACGCAGACGGAGAACCAAGTGCAAGGTAGATTCCTTTTGAATGTTGTAGTCT 6938889 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | || || | |||||||| || ||||||| | ||| || || || Sbjct 6938890 GCAAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGG 6938949 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| || ||| || | | |||| || |||| | ||| Sbjct 6938950 GGGATACCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCAATTGTATCGGAGCTTTCC 6939009 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || || || || |||||||| |||||||| Sbjct 6939010 ACCTCCAAGGTGATTGTCTTCCCAGTAAGCGTCTTTACAAAGATCTGCAT 6939059 >seq3 Length=27879571 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | |||||||| | || || || ||||||||||||||||| Sbjct 13656681 ATGCCACCACGTAGACGAAGCACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCA 13656622 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| ||||| || || ||||| ||||||| | ||| ||||| || Sbjct 13656621 GCCAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGT 13656562 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || ||||| || ||||||| || | | |||| |||||| | || Sbjct 13656561 GGGATACCCTCTTTATCCTGAATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCA 13656502 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | ||||| || || ||||| || ||||| || |||||| Sbjct 13656501 ACCTCCAAGGTTATGGTTTTCCCAGTGAGAGTCTTCACAAAGATTTGCATG 13656451 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || ||||| | || || || || || ||||||||||| Sbjct 13775141 ATCCCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCT 13775082 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | | ||| ||||| || || || || ||||||| | ||| ||||| || Sbjct 13775081 GCCAGTGTCCTACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGG 13775022 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| ||||||| || | | |||| ||||| | | ||| Sbjct 13775021 GGAATGCCTTCTTTGTCCTGAATCTTTGCCTTGACATTATCAATTGTGTCTGAGCTTTCC 13774962 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || |||| ||| || ||||| || ||||| Sbjct 13774961 ACTTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 13774912 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 || || || |||||||| |||||||| ||| | ||| || ||||||||| || ||||| Sbjct 13775336 GTTGACTCCTTTTGAATATTGTAATCTGCT-AGAGTCCGGCCATCTTCAAGCTGCTTACC 13775278 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| | ||||| | ||| ||||||||||||||||| || ||||| ||||||| ||| Sbjct 13775277 AGCAAATATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCTTT 13775218 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| || || | || || |||| ||| | || || || || || || Sbjct 13775217 CACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAGTGAGGGT 13775158 Query 114365 TTTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 13775157 CTTCACAAAGATCTGCAT 13775140 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||| | || || || || || ||||||||||| Sbjct 183782 ATACCACCACGCAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCA 183723 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| ||||| || || ||||| |||| |||||||| |||||||| Sbjct 183722 GCAAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGG 183663 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| |||||| || | | |||| |||||| | || || Sbjct 183662 GGGATTCCCTCCTTGTCCTGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCC 183603 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| || ||||| || ||||| ||||| Sbjct 183602 ACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 183553 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || || || | || ||||| || ||||| ||||| || Sbjct 13656909 ATGCCACCACGGAGACGCAACACCAAGTGAAGAGTTGATTCCTTCTGAATATTGTAGTCC 13656850 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| ||| ||| || || ||||| || || | ||||| | ||| ||||| ||| Sbjct 13656849 GCAAGAGTGCGACCATCCTCTAGCTGTTTCCCTGCAAAAATGAGCCTCTGCTGGTCTGGA 13656790 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| |||||||| ||||||| || | | |||| || || | ||| Sbjct 13656789 GGAATGCCCTCTTTGTCCTGAATCTTTGCCTTGACATTATCAATTGTATCTGAACTTTCA 13656730 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || || ||||| || || || ||||| || |||||| Sbjct 13656729 ACCTCCAAGGTGATTGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCATG 13656679 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || ||||| | ||| | || | || ||||| |||||||| ||||| || Sbjct 13841983 ATACCACCGCGGAGTCTGAGAACCAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCA 13842042 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | ||| ||||| || |||||||| | || || | ||||||||||| Sbjct 13842043 ACAAGGGTGTGTCCATCCTCAAGCTGCTTACCAGCAAAAATCAGCCTTTGTTGGTCCGGG 13842102 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| |||||| || || ||| | | |||| |||||| | | ||| Sbjct 13842103 GGGATGCCTTCCTTGTCGTGGATTTTGGCTTTGACATTATCAATGGTGTCAGAGCTTTCA 13842162 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| || ||||| || || || |||||||| Sbjct 13842163 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 13842212 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||| ||||| || | | || ||||| | ||||| || || || || ||||| || Sbjct 184010 ATACCACCACGGAGACGAAGCACCAAATGGAGGGTAGACTCCTTCTGGATATTGTAGTCT 183951 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| | || || ||| ||||| || || || || |||| || | ||| ||||| || Sbjct 183950 GCT-AGGGTGCGGCCATCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGGTCTGG 183892 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||||||||| ||||| |||||| || | | |||| |||||| | | || Sbjct 183891 GGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTC 183832 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || | ||| | || || || |||| ||| || ||||| |||||||| Sbjct 183831 GACCTCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 183781 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||| || | ||| || || || | || ||||| || || ||||||||||| Sbjct 13841527 ATGCCACCACAAAGACGCAACACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCT 13841586 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| || || ||||| || || | ||||| | ||| ||||| ||| Sbjct 13841587 GCAAGAGTGTGACCATCCTCTAGCTGTTTCCCTGCAAAAATGAGCCTCTGCTGGTCTGGA 13841646 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||||| || | | |||| || |||| || Sbjct 13841647 GGAATGCCCTCCTTGTCCTGAATCTTTGCCTTGACATTATCAATTGTATCGGAACTCTCA 13841706 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | || || ||||| || || || ||||| || |||||| Sbjct 13841707 ACCTCCAAAGTGATTGTCTTACCGGTGAGGGTCTTAACAAAGATTTGCATG 13841757 >seq4 Length=23292877 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 || ||||| || | || | || || || ||||| ||||||||||| | ||| | Sbjct 15563279 AGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGCAAGAGTTCTG 15563338 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| ||||| || ||||| |||| || | |||||| || ||||| ||||||||| Sbjct 15563339 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGGATGCCTTCT 15563398 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| ||||| ||| | | || | ||| || | ||||| || | || Sbjct 15563399 TTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCACTACTCTCGACCTCAATAGTG 15563458 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || |||||||||||||| || ||||| ||||| Sbjct 15563459 ATGGTCTTCCCGGTCAGAGTTTTCACGAAAATTTGCAT 15563496 >seq6 Length=38222195 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || ||| || || || || || || || Sbjct 34538211 GTTGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTCCGGCCGTCCTCGAGCTGCTTTCCG 34538270 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| | ||| ||||| ||||| ||||| || ||||| ||||| || Sbjct 34538271 GCGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 34538330 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| | || || || | ||| | || ||||||||||| ||| Sbjct 34538331 ACGTTGTCGATGGTGTCGGAGCTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTT 34538390 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 34538391 TTCACGAAGATCTGCATG 34538408 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||||||||| || | | || || || | || || || || |||||||||||||| Sbjct 34519593 ACCGCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGC 34519652 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| || || || || || || || |||| | | || |||||||| || Sbjct 34519653 CAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCCGGTGG 34519712 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || ||||| || || ||||| ||| | | |||| ||| || | | || || Sbjct 34519713 GATCCCTTCCTTATCCTGGATCTTGGCTTTGACATTATCAATGGTATCCGAGCTCTCAAC 34519772 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || ||||| |||| ||| || |||||||||||||| Sbjct 34519773 CTCCAAAGTGATGGTCTTGCCTGTCAAAGTCTTCACAAAAATCTGCAT 34519820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420118793057376