Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6 264 2e-65 >seq6 Length=38222195 Score = 264 bits (292), Expect = 2e-65 Identities = 504/733 (69%), Gaps = 12/733 (2%) Strand=Plus/Minus Query 42292 ACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGA 42351 ||| ||| |||||| |||||||||||||| || || |||||||||||||||| Sbjct 28139583 ACCCGGAGATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGGAGG 28139524 Query 42352 TTGACCTGGC-CAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTC 42410 | || || | |||| || ||| |||||| | || | ||| ||| ||| Sbjct 28139523 TCGATCTCGATCAAGACCAGCGCCA-CTGGGAAACCCTAACCCCCGGCGAGAAGCACTTC 28139465 Query 42411 CTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCC 42470 ||| || | || ||||||||||||||||| |||||||| || ||||| || ||| Sbjct 28139464 ATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTACTCGAGAATCTTGCC 28139405 Query 42471 ACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATA 42530 ||||||||||| ||||| ||| || |||||||| |||||||||||||||||| Sbjct 28139404 GGAAGGTTCATGAAGGAGGTCCAGGTCTCGGAGGCGCGTGCCTTCTACGGCTTCCAGATC 28139345 Query 42531 GCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGAT 42590 || || |||||| | ||||| ||| ||||| | || ||| | || |||||| || Sbjct 28139344 GCGATTGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACATCAAAGAC 28139285 Query 42591 CCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAG 42650 | | |||| | | || ||| |||| | || || || || ||| || ||| ||| Sbjct 28139284 TCGGACGAGAAGTCCCGTCTCTTCCGGGCCGTCGACACCATCCCTTGCGTCGCGAAAAAG 28139225 Query 42651 GCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTA 42710 ||| | ||||| || || |||||||| | |||| ||| |||| ||| || | || Sbjct 28139224 GCGCAGTGGGCCCTGAAATGGATCGACGGCTCCGA---AACTTTCGCGGAGCGGATCGTG 28139168 Query 42711 GCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTC 42770 ||||| || ||| || || |||||||||||||| |||| | | || || ||||| Sbjct 28139167 GCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTCTGCGCGATATTTTGGCTA 28139108 Query 42771 AAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 || || | || |||||| || || |||||||||||||| | ||| | || || Sbjct 28139107 AAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCGCGAGATGAA 28139048 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCG 42890 || || || | ||||| || ||||| || | ||| || |||| || |||| | | Sbjct 28139047 GGCCTCCACTGCGACTTCGCGTGCCTTCTCTACTC---CCTCCTCCGGATGAAGCTCACC 28138991 Query 42891 AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 ||||||| || | | ||| | | | || || || || |||||||||||| || | Sbjct 28138990 GAGGAGCGCGTGAAGTCAATCGTGCGGAACGCGGTTGACATAGAGAAGGAGTTCGTC-TG 28138932 Query 42951 CAGTCGC-TGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCC 43008 | | ||| | ||||| || | || || |||||| || || ||| | |||||||| Sbjct 28138931 C-GACGCGTTACCGTGCGCCTTAGTTGGGATGAACGGTGATCTGATGGGTCAGTACATCG 28138873 Query 43009 AGTACGTCGCCGA 43021 ||| |||||| || Sbjct 28138872 AGTTCGTCGCTGA 28138860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944303220676480