Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 1e-13 seq2 86.0 5e-12 seq4 84.2 2e-11 >seq3 Length=27879571 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || ||||||| ||| || || ||||||||| ||||||||||| || Sbjct 183780 ACCACCACGCAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGC 183721 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | ||| | || || | |||||||| ||||| ||||| |||||||| ||| || Sbjct 183720 AAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGG 183661 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | ||| |||||| ||| || ||||| | | | |||| ||| || Sbjct 183660 GATTCCCTCCTTGTCCTGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCAC 183601 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || ||||| || |||||||| || |||||||| Sbjct 183600 CTCAAGGGTGATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 183553 >seq2 Length=33308843 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTC-- 33967 || || ||||||| ||| || || ||| ||||||||||||||||||||| | |||| Sbjct 6938614 AGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC-AGTGTCCT 6938672 Query 33968 GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCT 34027 || |||| || | ||||| || ||||| || || | |||||| || || | || | Sbjct 6938673 GC-CGTCCTCAAGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATGCCTT 6938731 Query 34028 CTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA-TTCGACC 34086 |||||||| ||| ||| ||| | | | | | || | || || || ||| | Sbjct 6938732 CTTTGTCCTGAATCTTTGCCTTGACGTTATCAATTGTGTCTG-AGCTTTCCACTTCCAAA 6938790 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || || ||||| ||||| | || |||||||| ||||||||| Sbjct 6938791 GTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCATT 6938832 >seq4 Length=23292877 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| || |||||| ||||| || |||||| || ||||||||||| || Sbjct 15563270 CCTCCCCTGAGCCTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGCA 15563329 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| ||||||||| ||||| ||||| | ||| ||||| || Sbjct 15563330 AGAGTTCTGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGG 15563389 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACT---CACACTATCAGTAGATTCG 34077 | || ||||||||| | | || |||| || | | | ||||| || ||| Sbjct 15563390 ATGCCTTCTTTGTCC-TGGATCTTGGCTT--TGACATTGTCGATGGTATCACTACTCTCG 15563446 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || | || || || || ||||| || |||||||| || |||||||| || Sbjct 15563447 ACCTCAATAGTGATGGTCTTCCCGGTCAGAGTTTTCACGAAAATTTGCATATT 15563499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397047650124496