Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6 113 1e-19 >seq6 Length=38222195 Score = 113 bits (124), Expect = 1e-19 Identities = 297/441 (67%), Gaps = 18/441 (4%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||| |||| | ||||| ||||| || | || || || || ||| Sbjct 28139185 TTCGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTC 28139126 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAG----GTGTGATGCCTGGCCTCGGTCTGTCTAA 243404 ||||| || |||||||| || |||| | ||||||| || || | || || Sbjct 28139125 TGCGCGATATTTTGGCT----AAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAA 28139070 Query 243405 CGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAA 243463 |||||| ||| || || || ||||| ||| | |||| ||| ||| | || || Sbjct 28139069 CGAGTTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGC-CTTCTCTACTCCC 28139011 Query 243464 AGCTCCAGAACAAGCT-ACCATTCGAAACG-GTCAAACAAATCATCACAGAA-GCAGTTG 243520 |||| || ||||| ||| | | || || || |||| | | ||| || |||| Sbjct 28139010 TCCTCCGGATGAAGCTCACCGA--GGAGCGCGTGAAGTCAATCGTG-CGGAACGCGGTTG 28138954 Query 243521 AAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTA-TTGGCATGAACTCT 243579 | | || ||||| ||| | |||||||| | || ||| | |||| |||| |||||| | Sbjct 28138953 ACATAGAGAAGGAGTTCGTCTGCGACGCGTTACCGTGC-GCCTTAGTTGGGATGAACGGT 28138895 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || || ||||| ||||||||||| ||||| || || | | | ||| | || ||| Sbjct 28138894 GATCTGATGGGTCAGTACATCGAGTTCGTCGCTGATAGGCTGCTGGGTGCGTTGGGATAT 28138835 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 | |||| |||| | ||||||| |||| | |||||||| ||| ||||| ||| Sbjct 28138834 GGGAAACTGTATGATGTGCAGAACCCATTTGATTGGATGGAGCTGATTAGTCTTCAGGGG 28138775 Query 243700 AAAACTAACTTCTTCGAAAAG 243720 || || || ||||| || ||| Sbjct 28138774 AAGACCAATTTCTTTGAGAAG 28138754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102836929778800