Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6 129 7e-25 >seq6 Length=38222195 Score = 129 bits (142), Expect = 7e-25 Identities = 347/520 (67%), Gaps = 17/520 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| |||||||| | |||||| ||||| || |||||||| | | || || |||||| Sbjct 28138739 GTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCAT 28138798 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC---ACCCCAATCTGTTTGAGGAG 125874 ||||||||||||||| | || | ||| | | ||||| | || || Sbjct 28138799 CCAATCAAATGGGTTCTGCACAT--CATACAGTTTCCCATATCCCAA-CGCACCCAGCAG 28138855 Query 125875 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT 125934 | ||| | |||| |||| ||||||| | |||| ||| |||||| || | | | Sbjct 28138856 CCTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGC 28138915 Query 125935 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGC 125994 || || | |||||| ||| |||| ||||||| || || || || | ||||||||| | Sbjct 28138916 GCACGGTAACGCGTCGCAGACGAACTCCTTCTCTATGTCAACCGCGTTCCGCACGATTGA 28138975 Query 125995 GTGAATGGTGTCCACCCC-AGGTCTATT--GCGCAAAGTCTTGAAGAGTTCCACGGCAAA 126051 | | | ||| | || | || | | | | | || || |||| | || Sbjct 28138976 CTTCACGCGCTCCTCGGTGAGCTTCATCCGGAGGAGGGAGTAGAGAAGG--CACG-CGAA 28139032 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || |||||| || || || || ||||| | || ||||||||| ||| || ||||| Sbjct 28139033 GTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCAT 28139092 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 | || ||||| || | ||| || ||||| || || |||||||||||||| || || Sbjct 28139093 CAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCTTC 28139152 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGCGACTTTGTGTCAAACCACT 126230 ||| || ||||| || | || ||||| || |||| || || ||| | ||| | Sbjct 28139153 CACGCAGGCGAAGGCCACGATCCGCTCCGCGAAAGTTTCG-GA---GCCGTCGATCCATT 28139208 Query 126231 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 126270 ||| |||||||||||||||||| ||| || |||| ||| Sbjct 28139209 TCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGT 28139248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597330840827840