Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 seq6 113 4e-20 seq4 105 7e-18 seq3 100 3e-16 seq2 98.7 1e-15 seq5 86.0 6e-12 >seq1 Length=22681039 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || ||||||||| ||||| |||| Sbjct 22555166 GACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCCTCGAGCTGTTTTCCGGCG 22555225 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 22555226 AAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACA 22555285 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||| | ||| | ||| || || || || ||||| Sbjct 22555286 TTATCGATGGTGTCGGAGGACTCCACCTCCAACGTGATCGTCTTCCCCGTTAGGGTTTTC 22555345 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 22555346 ACGAAGATCTGCAT 22555359 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||| || | ||| || ||||||||| | ||| ||| Sbjct 22583184 GACTCCTTCTGGATGTTGTAGACGGCGAGAGTCCGGCCGTCCTCGAGCTATTTTCCGACG 22583243 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || || || |||||| | || || || || ||||| ||| || || | | Sbjct 22583244 AAGATAAGGCGTTGCTGGTCCAGCGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACA 22583303 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | |||||||| ||||||||||| | ||| | ||| || || || || ||||| Sbjct 22583304 TTGT-CGATGGTGTCGGAGGACTCCACCTCCAACGTGATCGTCTTCCCCGTTAGGGTTTT 22583362 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 22583363 CACGAAGATCTGCAT 22583377 >seq6 Length=38222195 Score = 113 bits (124), Expect = 4e-20 Identities = 162/225 (72%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 52329 CCGTGCGTTCGC-AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCAC 52387 || ||||| ||| |||||||| |||||||| |||| |||||||| || | ||| || Sbjct 28139242 CCTTGCGT-CGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGA---CGGCTCCGAAAC 28139187 Query 52388 GCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTT 52447 | || ||||| || |||||||||||| || || || | || || || || ||||| Sbjct 28139186 TTTCGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTT 28139127 Query 52448 TGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGA 52507 ||| || |||| | |||| | || | ||||| || ||||| ||| ||||| Sbjct 28139126 CTGCGCGATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGA 28139067 Query 52508 GTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT 52552 |||||| ||||| || ||||| || ||| ||||| |||||||| Sbjct 28139066 GTTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGCCT 28139022 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||| || ||| || ||||||||| || || |||| Sbjct 34538212 TTGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTCCGGCCGTCCTCGAGCTGCTTTCCGG 34538271 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| || | ||| ||||| ||||| || || || ||||| ||| || || | Sbjct 34538272 CGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA 34538331 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | |||||||| ||| ||||||| || | || || || ||||| |||| Sbjct 34538332 CGTTGTCGATGGTGTCGGAGCTCTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTTT 34538391 Query 138599 TTACAAAAATCTGCATG 138615 | || || ||||||||| Sbjct 34538392 TCACGAAGATCTGCATG 34538408 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/192 (72%), Gaps = 3/192 (2%) Strand=Plus/Minus Query 138425 CCTTT-TGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 ||||| || |||||||||||| || || || ||||||||| || || |||| || Sbjct 22063132 CCTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 22063073 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTG 138542 || |||||||| || || ||||| || ||||| ||||| ||| || || | |||| Sbjct 22063072 ATGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 22063013 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 | | | ||||||| | ||||||||||| || | || || || || || ||||| || Sbjct 22063012 T-CGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCAC 22062954 Query 138603 AAAAATCTGCAT 138614 || |||||||| Sbjct 22062953 GAATATCTGCAT 22062942 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||||| |||||| || || || |||| Sbjct 34520311 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTTCCGGCG 34520370 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||||| || || || ||||| ||| || || | Sbjct 34520371 AAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 34520430 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || |||||||||| ||| ||||||| || | || || || || || ||||| Sbjct 34520431 TTGTCGACGGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTTTTC 34520490 Query 138601 ACAAAAATCTGCATG 138615 |||||||| |||||| Sbjct 34520491 ACAAAAATTTGCATG 34520505 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || || || | | | |||||||| ||||||||||| || | Sbjct 34519594 CCGCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 34519653 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| || || |||| | |||| | | || |||||||| || Sbjct 34519654 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGG 34519713 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || ||| || ||| | | || | ||| || | ||| ||| Sbjct 34519714 ATCCCTTCCTTATCCTGGATCTTGGCTTTGACATTATCAATGGTATCCGAGCTCTCAACC 34519773 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || |||| ||| || |||||||||||||| Sbjct 34519774 TCCAAAGTGATGGTCTTGCCTGTCAAAGTCTTCACAAAAATCTGCAT 34519820 >seq4 Length=23292877 Score = 105 bits (116), Expect = 7e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 18773387 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 18773328 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 18773327 AAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 18773268 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||||| || | || || || || || ||||| Sbjct 18773267 TTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTTCCCCGTTAGGGTTTTC 18773208 Query 138601 ACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 18773207 ACGAAGATCTGCATGG 18773192 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGA 138479 ||||||||||| |||||||| || | ||| | || | || || ||||| || || | Sbjct 15563303 GACTCCTTTTGGATGTTGTAATCCGCAAGAGTTCTGCCA-TCTTCCAGTTGCTTGCCAGC 15563361 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | |||| || | |||||| || ||||| || ||||||||||| ||| || ||| | Sbjct 15563362 AAAGATCAGTCTCTGTTGATCTGGAGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTGAC 15563421 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||| || | ||| ||||| | || | || || || |||||||||| Sbjct 15563422 ATTG-TCGATGGTATCACTACTCTCGACCTCAATAGTGATGGTCTTCCCGGTCAGAGTTT 15563480 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||| ||||| Sbjct 15563481 TCACGAAAATTTGCAT 15563496 >seq3 Length=27879571 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | |||||||| | | | |||||||||||||||||||| || Sbjct 13656679 GCCACCACGTAGACGAAGCACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGC 13656620 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| || || || || | | |||| || | ||| ||||| || || Sbjct 13656619 CAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGG 13656560 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 ||||| ||||| || ||| | |||| || | ||| || | |||||| | ||| Sbjct 13656559 GATACCCTCTTTATC-CTGAATCTTTGCCTTCACGTTG-TCAATGGTGTCAGAACTCTCA 13656502 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| | || | ||||| ||||| ||||| || ||||| || |||||| Sbjct 13656501 ACCTCCAAGGTTATGGTTTTCCCAGTGAGAGTCTTCACAAAGATTTGCATG 13656451 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || ||||| | | | |||||||| || |||||||| || Sbjct 183779 CCACCACGCAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCA 183720 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || || | | |||| |||||||| |||||||| || Sbjct 183719 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGG 183660 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | |||| |||| | | |||||| | ||||||| Sbjct 183659 ATTCCCTCCTTGTCC-TGAATCTTGGCCTTAACGTTGT-CAATGGTGTCAGAAGACTCCA 183602 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || || ||||| || ||||| ||||| Sbjct 183601 CCTCAAGGGTGATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 183553 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || |||||||| | ||||||| |||||| || || || |||| | Sbjct 184430 GACTCCTTCTGGATATTGTAGTCTGCAAGAGTACGCCCGTCCTCAAGCTGCTTGCCGGCA 184371 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || | ||| ||||| || || || || || ||||| ||| | || | || | Sbjct 184370 AAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCT-TGAATCTTGGCCTTCAC 184312 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | |||||| | ||||||||| | || | || || || || || || | Sbjct 184311 ATTGT-CAATGGTGTCTGAGCTCTCCACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTCT 184253 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||||||||| Sbjct 184252 TGACAAAAATCTGCAT 184237 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| || || | |||| |||||||||||||||||||| Sbjct 13774910 CCACCACGCAGACGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCTGCA 13774851 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | |||||| | |||||||| | | |||| || | ||| || || || || Sbjct 13774850 AGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGA 13774791 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| ||| ||| | |||| || | || || | ||||| Sbjct 13774790 ATACCCTCCTTGTCCTGGATCTTTGCTTTAACATTG-TCAATTGTATCAGAGCTTTCCAC 13774732 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| || || || ||||| || ||||| Sbjct 13774731 CTCCAATGTGATTGTCTTCCCAGTAAGGGTCTTCACAAAGATTTGCAT 13774684 >seq2 Length=33308843 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| || || | | | || |||||||||||||||||||| Sbjct 6938833 CCACCACGCAGACGGAGAACCAAGTGCAAGGTAGATTCCTTTTGAATGTTGTAGTCTGCA 6938892 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | |||||| | |||||||| | | |||| || | ||| || || || || Sbjct 6938893 AGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGG 6938952 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||||||| || | |||| || | || |||| ||||| Sbjct 6938953 ATACCCTCCTTGTCCTGGATTTTTGCCTTGACATTG-TCAATTGTATCGGAGCTTTCCAC 6939011 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| || || |||||||| |||||||| Sbjct 6939012 CTCCAAGGTGATTGTCTTCCCAGTAAGCGTCTTTACAAAGATCTGCAT 6939059 >seq5 Length=29328693 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || |||||||| | || || ||||||||| || || |||| | Sbjct 19804397 GACTCCTTCTGGATATTGTAGTCAGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCA 19804338 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | |||||| || ||||| || || || ||||| ||| || ||| | Sbjct 19804337 AAGATGAGCCTCTGTTGATCTGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACG 19804278 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||| || | || || || || || || || Sbjct 19804277 TTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGACGGTCTTGCCGGTAAGCGTCTTC 19804218 Query 138601 ACAAAAATCTGCATG 138615 ||||| |||||| || Sbjct 19804217 ACAAAGATCTGCCTG 19804203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496243492402560