Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 120 4e-22 >seq6 Length=38222195 Score = 120 bits (132), Expect = 4e-22 Identities = 344/520 (66%), Gaps = 17/520 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| ||||| || | |||||| ||||| || |||||||| | || || || |||||| Sbjct 28138739 GTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCAT 28138798 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGC---ACCCCAATCTGTTTGAGGAG 127347 ||||||||||||||| | || | ||| | | ||||| | || || Sbjct 28138799 CCAATCAAATGGGTTCTGCACAT--CATACAGTTTCCCATATCCCAA-CGCACCCAGCAG 28138855 Query 127348 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT 127407 | ||| | |||| |||| ||||||| | |||| ||| |||||| || | | | Sbjct 28138856 CCTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGC 28138915 Query 127408 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGC 127467 || || | |||||| ||| |||| ||||||| ||||| || || | ||| ||||| | Sbjct 28138916 GCACGGTAACGCGTCGCAGACGAACTCCTTCTCTATGTCAACCGCGTTCCGCACGATTGA 28138975 Query 127468 GTGAATAGTGTCCACCCC-AGGTCTATT--GCGTAAAGTCTTGAAGAGTTCCACAGCAAA 127524 | | ||| | || | || | | | | | || || ||| || || Sbjct 28138976 CTTCACGCGCTCCTCGGTGAGCTTCATCCGGAGGAGGGAGTAGAGAAGG--CAC-GCGAA 28139032 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || |||||| || || || || ||||| | || ||||||||| |||||| ||||| Sbjct 28139033 GTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCAT 28139092 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 | || ||||| || | ||| || ||||| || || || |||||||||||||| || Sbjct 28139093 CAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCTTC 28139152 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCAAACCACT 127703 ||| || ||||| || | | ||||| || |||| ||| | || | ||| | Sbjct 28139153 CACGCAGGCGAAGGCCACGATCCGCTCCGCGAAAGTTTCGGAGC----CGTCGATCCATT 28139208 Query 127704 TCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGT 127743 ||| |||||||| ||||||||| ||| || |||| ||| Sbjct 28139209 TCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGT 28139248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613483825375680