Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6 170 3e-37 >seq6 Length=38222195 Score = 170 bits (188), Expect = 3e-37 Identities = 549/837 (66%), Gaps = 19/837 (2%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGAT-TCCATGAACCCGAATGGG 159706 ||||||| || || |||||||| |||| | | || | | ||||| | | |||||| Sbjct 28138753 TCTTCTCAAAGAAATTGGTCTTCCCCTGAA-GACTAATCAGCTCCATCCAATCAAATGGG 28138811 Query 159707 TTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAAT 159766 |||| ||| | ||| | ||| | |||| | || |||||| ||| || || || || Sbjct 28138812 TTCTGCACATCATACAGTTTCCCATATCCCAACGCACCCAGCAGCCTATCAGCGACGAAC 28138871 Query 159767 TCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA-GCCTAACGGGGAGCGCTTC 159825 |||||||| || |||| | |||| ||| ||||| | | | | |||| | ||| || Sbjct 28138872 TCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCGCACGGTAA-CGCGTC 28138930 Query 159826 CGACAGAAACTCCTTCTCAATCTCGACCGC-TTCGGTCACAATCTGCGAGACACGTTCGT 159884 | | ||||||||||| || || ||||| ||| | ||| || | || || || | Sbjct 28138931 GCAGACGAACTCCTTCTCTATGTCAACCGCGTTCCG-CACGATTGACTTCACGCGCTCCT 28138989 Query 159885 ACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 |||| | | | || | | || |||||||| ||||||||||| || | Sbjct 28138990 CGGTGAGCTTCATCCGGAGGAGGGAGT---AGAGAAGGCACGCGAAGTCGCAGTGGAGGC 28139046 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 | || || || ||||| |||||||| || | | | || |||||||| | ||| ||| || Sbjct 28139047 CTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAACCCGCGCTTTT 28139106 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAAC 160063 | |||||||| || | |||| |||| | | | || |||||||| |||||| || || Sbjct 28139107 TTAGCCAAAATATCG-CGCAGAAGCTTCCCGAGAAGAAGATCCCTTCCACGCAGGCGAAG 28139165 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 ||||||| || ||| | ||| | | || | | | | |||| | |||||| | Sbjct 28139166 GCCACGATCCGCTCCGCGAAA---GTTTCGGAGCCGTCGATCCATTTCAGGGCCCACTGC 28139222 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTC 160183 ||||| || |||| ||| || ||| |||||||| || | | | || ||| | | Sbjct 28139223 GCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGGAAGAGACGGGACTTCTCGTCC 28139282 Query 160184 ACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATG 160243 || ||||| || | | || |||||| || | ||| | || || || Sbjct 28139283 GAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAATC 28139342 Query 160244 GCCATCTGAAAGTTGTAGAAATATGTCGCCTCC-AGATACTGCACCTCCTGTGTGAACCT 160302 || ||||| ||| |||||| ||||||| ||| ||| ||||||| ||||||| Sbjct 28139343 GCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGA-CCTGGACCTCCTTCATGAACCT 28139401 Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362 | | ||||| | || | ||||||| ||| || ||||| || | ||||||| Sbjct 28139402 TCCGGCAAGATTCTCGAGTACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGTGAGT 28139461 Query 160363 GATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAA 160422 |||||| || ||||| | | | || |||||||||| | |||||| | | Sbjct 28139462 GATGAAGTGCTTCTCGCCGGGGGTTAG---GGTTTCCCAGTGGCGCTGGTCTTGATCGAG 28139518 Query 160423 ATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 ||| ||||| || ||| |||| | |||| || | |||||||| ||||||| Sbjct 28139519 ATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGTACATCTCCCAGAT 28139575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795124904586880