Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6 125 9e-24 seq2 113 6e-20 >seq6 Length=38222195 Score = 125 bits (138), Expect = 9e-24 Identities = 311/465 (67%), Gaps = 18/465 (4%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TC 15973 ||| || ||||| | | || ||||| || | |||| ||||| || |||| || Sbjct 16169328 ATCGAGAATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGT---GTTACCCTC 16169384 Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 |||||||||||| |||||||||||||| |||| || ||||| | ||||||||| || Sbjct 16169385 AAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCT-- 16169442 Query 16034 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 |||| |||| | | ||| ||| || |||||||| ||||||| || || || Sbjct 16169443 -CCACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAAT 16169501 Query 16091 GCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 ||| ||| ||||| ||| |||| ||| ||||| || || || || || ||| Sbjct 16169502 GCAAGGTGCGTTTTCCTTAGC--CTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACA 16169559 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207 ||||||||||| || ||||| | | | | | || | || || || ||| || ||| Sbjct 16169560 CCAACAAACATTTCAACAAACTCAGAACCTG-AGATAGAGAAAAAAGGAACACCAGCTTC 16169618 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 ||| ||||| || || || |||||||| || || ||||| || | || || | Sbjct 16169619 ACCAGCAATTGCCTTTGCTAGCAGAGTCTTTCCAGTTCCTGGAGGGCCAACAAGAAGAAC 16169678 Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 ||| ||||| || ||| || | |||||||||| | ||| | || ||||| Sbjct 16169679 CCCTTTAGGAATGCGAGCTCCAACAGCAGTGAATCTCTCAGGCTTCTTTAAGAACTCCAC 16169738 Query 16328 AATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 | || | || || | ||||| | || | ||| ||||||| Sbjct 16169739 CACTTCCACAAAATCCTGCTTGGCTTCATCCACCCCAGCAACATC 16169783 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 102174 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 102233 || || ||||| || | || || || || || || || ||||||||||| || |||| Sbjct 28139185 TTCGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTC 28139126 Query 102234 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 102293 ||||| || | |||||| || ||||| || | ||||| ||||| |||||| |||||| Sbjct 28139125 TGCGCGATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAG 28139066 Query 102294 CTTATCTCTCGTGACGAGGGACTCCAC 102320 | ||||| || || || || |||||| Sbjct 28139065 TTGATCTCGCGAGATGAAGGCCTCCAC 28139039 >seq2 Length=33308843 Score = 113 bits (124), Expect = 6e-20 Identities = 251/373 (67%), Gaps = 8/373 (2%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| || |||||||| ||||| | ||| |||||||| || |||| |||||||| | Sbjct 22856932 AAACCCGTCCATCTCCGTCAATAACTGATTAATAGTCTGCTCCCTCTCATCATTTCCA-- 22856989 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| || || | | ||| | || |||||||||||||||||||| || || ||| Sbjct 22856990 CCTCCCATCCCCGCCCCCCTCTGCCTCCCAACGGCATCAATCTCATCAATAAACACAATG 22857049 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 || || ||||| || || ||||| | |||| || | | || ||||| | Sbjct 22857050 CAGGG--CGCTTTCGACTTCGCCTTCTCAAACAAGTCCCTCACTCTCGACGCTCCCACTC 22857107 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | ||||||| ||||||||| | || |||| ||| || ||| || || |||| Sbjct 22857108 CCACAAACAGCTCCACAAACTCTGACGCGGCACACGAGAAGAACGGCGTGCCAGCCTCAC 22857167 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | |||| || || || || || ||||| || ||||| || ||| | || || | Sbjct 22857168 CAGCAACCGCACGAGCCAGCAGGGTCTTTCCGGTACCGGGAGGGCCCACAAGCAGACACC 22857227 Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329 || |||||||| || || || ||| | ||||| | ||| | |||||||||| Sbjct 22857228 CTTTGGGAATCTTAGCTCCCAAGGCAGTGTACTTATCAGGATTCTTCAAGAAATCCACAA 22857287 Query 16330 TCTCTTCCAATTC 16342 ||| | ||| || Sbjct 22857288 CCTCCTGCAACTC 22857300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620718749714560