Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq3048 572 2e-158 seq2823 376 3e-99 seq838 338 7e-88 seq929 320 2e-82 seq2704 163 3e-35 >seq3048 Length=155691 Score = 572 bits (634), Expect = 2e-158 Identities = 719/984 (73%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 168500 TGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCA 168559 ||| |||| ||||| | ||| | ||||| |||| ||||| ||||| || |||||||| Sbjct 1408 TGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1349 Query 168560 TGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGA 168618 |||||| || ||| | | ||| || ||| |||| || ||||||||||| || || || Sbjct 1348 ACTTTATTGACCGCAACTTC-TGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGA 1290 Query 168619 TATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTC 168678 ||| || || || | |||||||| | || || || | || |||||||| || || || Sbjct 1289 TATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTC 1230 Query 168679 AGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGC 168738 ||||| || | || |||| || || ||| | ||||| |||||||| |||||||| Sbjct 1229 CGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGC 1170 Query 168739 AGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTT 168798 ||| | | ||||| |||||||| || ||||| ||||| || | | | | ||||| Sbjct 1169 GGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTT 1110 Query 168799 CCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTAT 168858 | || | || | || ||| |||||| | |||||||| | | | | || ||||| Sbjct 1109 CTTACTTGGTGTAGCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 1050 Query 168859 GAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCT 168918 | | |||||||| |||||| |||||||| || || | || || ||| || ||| | Sbjct 1049 GCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 990 Query 168919 TGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAAC 168978 | |||||| ||||||| || || ||||| ||||||||||||||||| ||||| || Sbjct 989 GATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTAC 930 Query 168979 ATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATAT 169038 |||||||||||| | ||||||||||| ||||||||||| |||||||| || || || || Sbjct 929 TTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACAT 870 Query 169039 GGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGT 169098 | ||| || || ||| | || || || || |||||| || ||||||||||| | || Sbjct 869 GCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGT 810 Query 169099 AACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTT 169158 ||| ||| | | ||||| || || || || | |||||| || | ||||||| || Sbjct 809 AACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATT 750 Query 169159 CGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAAT 169218 ||||||||| ||||||||||||||||| || || || ||||| || || || |||| || Sbjct 749 CGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGAT 690 Query 169219 CTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCC 169278 |||||| ||||| ||||||||||| || | | | ||||||||| |||| | | || Sbjct 689 CTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCC 630 Query 169279 AGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGG 169338 || ||| || | ||||| ||| || | |||||| | || ||||| |||||||| || || Sbjct 629 TGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGG 570 Query 169339 ATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGA 169398 ||||| || || ||||| || || ||| | | ||| | ||| ||| |||| ||| Sbjct 569 TTTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGA 510 Query 169399 CGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTT 169458 | | ||| | || || |||||||||||||| |||||||| ||||| ||||| || || Sbjct 509 TATTATCAACCGCGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTT 450 Query 169459 CCCACTAGACTTAGCATCTGCTGA 169482 ||| |||||| |||| ||| ||| Sbjct 449 CCCTCTAGACCTAGCTGCTGTTGA 426 >seq2823 Length=1025 Score = 376 bits (416), Expect = 3e-99 Identities = 422/562 (75%), Gaps = 2/562 (0%) Strand=Plus/Plus Query 168923 TACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTC 168982 |||||| ||||||| || || ||||| ||||||||||||||||| ||||| || ||| Sbjct 2 TACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTC 61 Query 168983 AACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCC-ATATGGC 169041 ||||||||| | ||||||||||| ||||||||||| |||||||| || || | | ||| Sbjct 62 AACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCTACATGCT 121 Query 169042 AGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAAC 169101 ||| || || ||| | || || || || |||||| || ||||||||||| | ||||| Sbjct 122 AGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAAC 181 Query 169102 ATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGG 169161 ||| | | ||||| || || || || | |||||| || | ||||||| ||||| Sbjct 182 CTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGG 241 Query 169162 TCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTT 169221 |||||| ||||||||||||||||| || || || ||||| || || || |||| ||||| Sbjct 242 TCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTT 301 Query 169222 CCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGT 169281 ||| ||||| ||||||||||| || | | | ||||||||| |||| | | || || Sbjct 302 CCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGT 361 Query 169282 TGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATT 169341 ||| || | ||||| ||| || | |||||| | || ||||| |||||||| || || || Sbjct 362 AGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTT 421 Query 169342 TAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGT 169401 ||| || || ||||| || || ||| | | ||| | ||| ||| |||| ||| | Sbjct 422 TAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATAT 481 Query 169402 ACTTAACAGAG-CAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCC 169460 | ||| | | | || |||||||||||||| |||||||| ||||| ||||| || |||| Sbjct 482 TATCAACCGCGACTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCC 541 Query 169461 CACTAGACTTAGCATCTGCTGA 169482 | |||||| |||| ||| ||| Sbjct 542 CTCTAGACCTAGCTGCTGTTGA 563 >seq838 Length=1002 Score = 338 bits (374), Expect = 7e-88 Identities = 442/608 (73%), Gaps = 3/608 (0%) Strand=Plus/Minus Query 168500 TGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCA 168559 ||| |||| ||||| | ||| | ||||| |||| ||||| ||||| || |||||||| Sbjct 609 TGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 550 Query 168560 TGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGA 168618 |||||| || ||| | | ||| || ||| |||| || ||||||||||| || || || Sbjct 549 ACTTTATTGACCGCAACTTC-TGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGA 491 Query 168619 TATCGACGGAATCAGAG-AACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCT 168677 ||| || || || | | ||||||| | || || || | || |||||||| || || | Sbjct 490 TATTGATGGTATTCGTGTAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTT 431 Query 168678 CAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAG 168737 | ||||| || | || |||| || || ||| | ||||| |||||||| ||||||| Sbjct 430 CCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAG 371 Query 168738 CAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACT 168797 | ||| | | ||||| |||||||| || ||||| ||||| || | | | | |||| Sbjct 370 CGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACT 311 Query 168798 TCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTA 168857 || || | || | || ||| |||||| | |||||||| | | | | || |||| Sbjct 310 TCTTACTTGGTGTAGCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTA 251 Query 168858 TGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCC 168917 || | |||||||| |||||| |||||||| || || | || || ||| || ||| Sbjct 250 TGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCT 191 Query 168918 TTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAA 168977 | | |||||| ||||||| || || ||||| ||||||||||||||||| ||||| | Sbjct 190 TGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTA 131 Query 168978 CATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATA 169037 | |||||||||||| | ||||||||||| ||||||||||| |||||||| || || || | Sbjct 130 CTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACA 71 Query 169038 TGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTG 169097 || ||| || || ||| | || || || || |||||| || ||||||||||| | | Sbjct 70 TGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGG 11 Query 169098 TAACATCT 169105 |||| ||| Sbjct 10 TAACCTCT 3 >seq929 Length=1222 Score = 320 bits (354), Expect = 2e-82 Identities = 420/578 (73%), Gaps = 3/578 (1%) Strand=Plus/Plus Query 168500 TGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCA 168559 ||| |||| ||||| | ||| | ||||| |||| ||||| ||||| || |||||||| Sbjct 646 TGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 705 Query 168560 TGTTTATTAACAGCAGCAGCATGT-TTCATTGTT-GCATTTATTGCTGCACCACCTGTCG 168617 |||||| || ||| | | ||| || ||| || || || ||||||||||| || || | Sbjct 706 ACTTTATTGACCGCAACTTC-TGTATTTATTATTAGCTTTCATTGCTGCACCTCCGGTAG 764 Query 168618 ATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCT 168677 |||| || || || | |||||||| | || || || | || |||||||| || || | Sbjct 765 ATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTT 824 Query 168678 CAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAG 168737 | ||||| || | || |||| || || ||| | ||||| |||||||| ||||||| Sbjct 825 CCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAG 884 Query 168738 CAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACT 168797 | ||| | | ||||| |||||||| || ||||| ||||| || | | | | |||| Sbjct 885 CGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACT 944 Query 168798 TCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTA 168857 || || | || | || ||| |||||| | |||||||| | | | | || |||| Sbjct 945 TCTTACTTGGTGTAGCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTA 1004 Query 168858 TGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCC 168917 || | |||||||| |||||| |||||||| || || | || || ||| || ||| Sbjct 1005 TGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCT 1064 Query 168918 TTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAA 168977 | | |||||| ||||||| || || ||||| ||||||||||||||||| ||||| | Sbjct 1065 TGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTA 1124 Query 168978 CATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATA 169037 | |||||||||||| | ||||||||||| ||||||||||| |||||||| || || || | Sbjct 1125 CTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACA 1184 Query 169038 TGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTC 169075 || ||| || || ||| | || || || || |||||| Sbjct 1185 TGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTC 1222 >seq2704 Length=1012 Score = 163 bits (180), Expect = 3e-35 Identities = 205/279 (73%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 168500 TGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCA 168559 ||| |||| ||||| | ||| | ||||| |||| ||||| ||||| || |||||||| Sbjct 687 TGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 746 Query 168560 TGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGA 168618 |||||| || ||| | | ||| || ||| |||| || ||||||||||| || || || Sbjct 747 ACTTTATTGACCGCAACTTC-TGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGA 805 Query 168619 TATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTC 168678 ||| || || || | |||||||| | || || || | || |||||||| || || || Sbjct 806 TATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTC 865 Query 168679 AGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGC 168738 ||||| || | || |||| || || ||| | ||||| |||||||| |||||||| Sbjct 866 CGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGC 925 Query 168739 AGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTA 168777 ||| | | ||||| |||||||| || ||||| ||||| Sbjct 926 GGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTA 964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564420094775040