Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq3048 495 5e-135 seq2823 333 4e-86 seq838 304 2e-77 seq929 300 2e-76 seq2704 132 7e-26 >seq3048 Length=155691 Score = 495 bits (548), Expect = 5e-135 Identities = 710/995 (71%), Gaps = 4/995 (0%) Strand=Plus/Minus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 |||||| | ||| | || || || || ||| | ||| |||| ||||||||||| | Sbjct 1417 TTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1358 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413 ||||| ||| | | | || || || || || | || ||||| ||||||||| Sbjct 1357 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCT 1298 Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473 || || ||||| || || || | || || ||| |||| |||||| | || || ||||| Sbjct 1297 CCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAAT 1238 Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533 || || || ||||| || | |||| ||| || || || || ||||| ||||| || Sbjct 1237 ATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATA 1178 Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593 |||||||| || | ||||| |||||| | ||||| ||||| |||| | || || | Sbjct 1177 TGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTT 1118 Query 215594 TTCCACTTCCTCATTGGTATTTCT-GC-ATACTGCGGAAGACAGTGGGAACTTTCTTACA 215651 | |||||| | ||||| | || || ||| || || | ||||||||||| || | Sbjct 1117 CTACACTTCTTACTTGGTGTAGCTTGCTATA-TG-GGTCGTGAGTGGGAACTTAGTTTCC 1060 Query 215652 GATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTG 215711 | | |||||| | |||||||| |||||| || || || ||||| | ||||| || Sbjct 1059 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 1000 Query 215712 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAA 215771 | || ||| | | || ||| | ||||| || || ||||| | |||||| || |||| Sbjct 999 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAA 940 Query 215772 TCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACC 215831 ||||||| || ||||||| |||| |||| ||||| |||||||||||||| || ||||||| Sbjct 939 TCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACC 880 Query 215832 CATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACG 215891 |||| |||||| |||||||||||||||| || || ||||| | ||| ||| ||||| | Sbjct 879 CATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATG 820 Query 215892 GTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACG 215951 |||| | || || ||| | | ||||| || || || || | |||||| || | | Sbjct 819 GTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 760 Query 215952 GTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTG 216011 |||||| ||||| |||||||| ||||| || || |||||||| || || ||||| |||| Sbjct 759 GTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTG 700 Query 216012 GTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 216071 | || | ||||||||||| || ||||||||| || | | | ||||||||| | | Sbjct 699 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAG 640 Query 216072 CAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCA 216131 | || | ||||| | |||||||| || || | ||| || |||||||| |||| Sbjct 639 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCA 580 Query 216132 ACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTA 216191 || | || ||||| || ||||| || ||||| || || ||| || ||| || Sbjct 579 ACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 520 Query 216192 CTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACG 216251 ||||||| || || | ||| | || |||||||||||||| ||||| || ||||| | Sbjct 519 CTTGGGCTGATATTATCAACCGCGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATG 460 Query 216252 CTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 |||| || ||||| ||||| | ||||||| |||| Sbjct 459 CTCATAATTTCCCTCTAGACCTAGCTGCTGTTGAA 425 >seq2823 Length=1025 Score = 333 bits (368), Expect = 4e-86 Identities = 413/563 (73%), Gaps = 2/563 (0%) Strand=Plus/Plus Query 215726 TATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTC 215785 || ||| | ||||| || || ||||| | |||||| || ||||||||||| || ||| Sbjct 2 TACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTC 61 Query 215786 AACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCC-ACATGTT 215844 |||| |||| |||| ||||| |||||||||||||| || ||||||||||| | ||||| | Sbjct 62 AACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCTACATGCT 121 Query 215845 AGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTAC 215904 ||||||||||||||| || || ||||| | ||| ||| ||||| ||||| | || || Sbjct 122 AGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAAC 181 Query 215905 ATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGG 215964 ||| | | ||||| || || || || | |||||| || | ||||||| ||||| Sbjct 182 CTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGG 241 Query 215965 ACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTT 216024 |||||||| ||||| || || |||||||| || || ||||| ||||| || | ||||| Sbjct 242 TCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTT 301 Query 216025 CCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGT 216084 |||||| || ||||||||| || | | | ||||||||| | || || | ||||| Sbjct 302 CCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGT 361 Query 216085 TATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTT 216144 | |||||||| || || | ||| || |||||||| |||||| | || ||||| Sbjct 362 AGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTT 421 Query 216145 CAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGT 216204 || ||||| || ||||| || || ||| || ||| ||||||||| || | Sbjct 422 TAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATAT 481 Query 216205 TCTTAACAGAG-CAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 216263 | | ||| | | | |||||||||||||| ||||| || ||||| ||||| || |||| Sbjct 482 TATCAACCGCGACTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCC 541 Query 216264 CATTAGACTTGGCTGCTGCTGAA 216286 | ||||| | ||||||| |||| Sbjct 542 CTCTAGACCTAGCTGCTGTTGAA 564 >seq838 Length=1002 Score = 304 bits (336), Expect = 2e-77 Identities = 442/618 (72%), Gaps = 5/618 (1%) Strand=Plus/Minus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 |||||| | ||| | || || || || ||| | ||| |||| ||||||||||| | Sbjct 618 TTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 559 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413 ||||| ||| | | | || || || || || | || ||||| ||||||||| Sbjct 558 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCT 499 Query 215414 CCTGTCGATATCGACGGAATCAGAG-AGCCAGTTGCTGGTTCTTTAATGTATGGTAACAA 215472 || || ||||| || || || | | | || ||| |||| |||||| | || || ||||| Sbjct 498 CCGGTAGATATTGATGGTATTCGTGTAACCTGTTTCTGGATCTTTACTTTACGGAAACAA 439 Query 215473 CATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTAT 215532 || || || ||||| || | |||| ||| || || || || ||||| ||||| || Sbjct 438 TATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAAT 379 Query 215533 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTAT 215592 |||||||| || | ||||| |||||| | ||||| ||||| |||| | || || | Sbjct 378 ATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGT 319 Query 215593 CTTCCACTTCCTCATTGGTATTTCT-GC-ATACTGCGGAAGACAGTGGGAACTTTCTTAC 215650 | |||||| | ||||| | || || ||| || || | ||||||||||| || | Sbjct 318 TCTACACTTCTTACTTGGTGTAGCTTGCTATA-TG-GGTCGTGAGTGGGAACTTAGTTTC 261 Query 215651 AGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTT 215710 | | |||||| | |||||||| |||||| || || || ||||| | ||||| | Sbjct 260 CGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 201 Query 215711 GCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGA 215770 || || ||| | | || ||| | ||||| || || ||||| | |||||| || ||| Sbjct 200 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGA 141 Query 215771 ATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCAC 215830 |||||||| || ||||||| |||| |||| ||||| |||||||||||||| || |||||| Sbjct 140 ATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCAC 81 Query 215831 CCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCAC 215890 ||||| |||||| |||||||||||||||| || || ||||| | ||| ||| ||||| Sbjct 80 CCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCAT 21 Query 215891 GGTTCACTTGTTACATCT 215908 ||||| | || || ||| Sbjct 20 GGTTCTTTGGTAACCTCT 3 >seq929 Length=1222 Score = 300 bits (332), Expect = 2e-76 Identities = 419/581 (72%), Gaps = 5/581 (1%) Strand=Plus/Plus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 |||||| | ||| | || || || || ||| | ||| |||| ||||||||||| | Sbjct 637 TTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 696 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACT-TGTTTCATCGTAGCATTCATCGCTGCACC 215412 ||||| ||| | | | || || || | ||| | |||| ||||| |||||||| Sbjct 697 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATTAGCTTTCATTGCTGCACC 756 Query 215413 TCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAA 215472 ||| || ||||| || || || | || || ||| |||| |||||| | || || ||||| Sbjct 757 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAA 816 Query 215473 CATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTAT 215532 || || || ||||| || | |||| ||| || || || || ||||| ||||| || Sbjct 817 TATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAAT 876 Query 215533 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTAT 215592 |||||||| || | ||||| |||||| | ||||| ||||| |||| | || || | Sbjct 877 ATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGT 936 Query 215593 CTTCCACTTCCTCATTGGTATTTCT-GC-ATACTGCGGAAGACAGTGGGAACTTTCTTAC 215650 | |||||| | ||||| | || || ||| || || | ||||||||||| || | Sbjct 937 TCTACACTTCTTACTTGGTGTAGCTTGCTATA-TG-GGTCGTGAGTGGGAACTTAGTTTC 994 Query 215651 AGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTT 215710 | | |||||| | |||||||| |||||| || || || ||||| | ||||| | Sbjct 995 CGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 1054 Query 215711 GCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGA 215770 || || ||| | | || ||| | ||||| || || ||||| | |||||| || ||| Sbjct 1055 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGA 1114 Query 215771 ATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCAC 215830 |||||||| || ||||||| |||| |||| ||||| |||||||||||||| || |||||| Sbjct 1115 ATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCAC 1174 Query 215831 CCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTC 215871 ||||| |||||| |||||||||||||||| || || ||||| Sbjct 1175 CCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTC 1215 >seq2704 Length=1012 Score = 132 bits (146), Expect = 7e-26 Identities = 201/286 (70%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 |||||| | ||| | || || || || ||| | ||| |||| ||||||||||| | Sbjct 678 TTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 737 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413 ||||| ||| | | | || || || || || | || ||||| ||||||||| Sbjct 738 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCT 797 Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473 || || ||||| || || || | || || ||| |||| |||||| | || || ||||| Sbjct 798 CCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAAT 857 Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533 || || || ||||| || | |||| ||| || || || || ||||| ||||| || Sbjct 858 ATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATA 917 Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTT 215579 |||||||| || | ||||| |||||| | ||||| ||||| |||| Sbjct 918 TGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTT 963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745053212391040