Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq3048 533 2e-146 seq2823 336 3e-87 seq838 320 2e-82 seq929 306 4e-78 seq2704 140 4e-28 >seq3048 Length=155691 Score = 533 bits (590), Expect = 2e-146 Identities = 709/985 (72%), Gaps = 0/985 (0%) Strand=Plus/Minus Query 169697 ATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCC 169756 ||||| |||| ||||| | ||||| | || |||| ||||| ||||| |||||||||| Sbjct 1410 ATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCC 1351 Query 169757 CATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGG 169816 | | |||| | ||| | | ||||| |||||||||| || || || || || | Sbjct 1350 CTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAG 1291 Query 169817 ACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCT 169876 | || ||||| || | |||||||| | || || || | || || ||||| || || | Sbjct 1290 ATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTT 1231 Query 169877 CTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAG 169936 | ||||| || | || |||| || || ||| | ||||| || || || ||||||| Sbjct 1230 CCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAG 1171 Query 169937 CAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACT 169996 | || || | ||||| ||||| || |||||||| |||||| | || || | | |||| Sbjct 1170 CGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACT 1111 Query 169997 TCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTA 170056 || | | || | || ||| |||||| | |||||||||| | |||| | |||| Sbjct 1110 TCTTACTTGGTGTAGCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTA 1051 Query 170057 TGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCT 170116 |||| |||||||| ||| |||||||| ||||| || |||| || ||||| |||| Sbjct 1050 TGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCT 991 Query 170117 TAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTA 170176 | | || || | ||||| ||| || || ||||| ||||||||||| ||||| |||| Sbjct 990 TGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTA 931 Query 170177 CATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATA 170236 | || ||||||||| | ||||||||||| ||||||||||| |||||||||||||| || | Sbjct 930 CTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACA 871 Query 170237 TGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTG 170296 || ||| || |||||| | || || || | || ||| || ||||| ||||| | | Sbjct 870 TGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGG 811 Query 170297 TAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAAT 170356 |||| ||| | | ||||| || || ||||| || || || || | || |||| || Sbjct 810 TAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGAT 751 Query 170357 TCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTA 170416 |||| ||||| |||||||| || || || || || || ||||| || ||||| || | | Sbjct 750 TCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGA 691 Query 170417 TCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCC 170476 |||||||||||||||| || |||||| |||| | | ||||||||| | ||| | | | Sbjct 690 TCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGC 631 Query 170477 CTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATG 170536 |||||||| | |||||||| || | | ||||| |||| ||||| || ||| | |||| Sbjct 630 CTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATG 571 Query 170537 GATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAG 170596 | ||||| ||||| || || | || ||| | ||| ||| || ||| ||||| | Sbjct 570 GTTTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTG 511 Query 170597 ACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACT 170656 | || | ||| | || || || ||||||||||| |||||||| |||||||| || || | Sbjct 510 ATATTATCAACCGCGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATT 451 Query 170657 TCCCACTTGACTTGGCAACTGCTGA 170681 |||| || ||| | || ||| ||| Sbjct 450 TCCCTCTAGACCTAGCTGCTGTTGA 426 >seq2823 Length=1025 Score = 336 bits (372), Expect = 3e-87 Identities = 408/553 (74%), Gaps = 2/553 (0%) Strand=Plus/Plus Query 170131 GGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATG 170190 ||||| ||| || || ||||| ||||||||||| ||||| ||||| || ||||||||| Sbjct 11 GGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATG 70 Query 170191 TTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCC-ATATGGCAGGGGTTGC 170249 | ||||||||||| ||||||||||| |||||||||||||| | | ||| ||| || || Sbjct 71 ATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCTACATGCTAGGTGTGGC 130 Query 170250 TGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCT 170309 |||| | || || || | || ||| || ||||| ||||| | ||||| ||| | | Sbjct 131 TGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTT 190 Query 170310 AATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGA 170369 ||||| || || ||||| || || || || | || |||| |||||| ||||| || Sbjct 191 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGA 250 Query 170370 AGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGC 170429 |||||| || || || || || || ||||| || ||||| || | |||||||||||||| Sbjct 251 AGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 310 Query 170430 TAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCAT 170489 ||| || |||||| |||| | | ||||||||| | ||| | | ||||||||| | || Sbjct 311 TAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTAT 370 Query 170490 CTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAA 170549 |||||| || | | ||||| |||| ||||| || ||| | ||||| ||||| ||||| Sbjct 371 CTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAA 430 Query 170550 CCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAG 170609 || || | || ||| | ||| ||| || ||| ||||| || || | ||| | Sbjct 431 TCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATCAACCG 490 Query 170610 AG-CAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGACT 170668 | | || || ||||||||||| |||||||| |||||||| || || ||||| || ||| Sbjct 491 CGACTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACC 550 Query 170669 TGGCAACTGCTGA 170681 | || ||| ||| Sbjct 551 TAGCTGCTGTTGA 563 >seq838 Length=1002 Score = 320 bits (354), Expect = 2e-82 Identities = 437/609 (72%), Gaps = 1/609 (0%) Strand=Plus/Minus Query 169697 ATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCC 169756 ||||| |||| ||||| | ||||| | || |||| ||||| ||||| |||||||||| Sbjct 611 ATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCC 552 Query 169757 CATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGG 169816 | | |||| | ||| | | ||||| |||||||||| || || || || || | Sbjct 551 CTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAG 492 Query 169817 ACATCGATGGAATCAGAG-AACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATC 169875 | || ||||| || | | ||||||| | || || || | || || ||||| || || Sbjct 491 ATATTGATGGTATTCGTGTAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATT 432 Query 169876 TCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAA 169935 || ||||| || | || |||| || || ||| | ||||| || || || |||||| Sbjct 431 TCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAA 372 Query 169936 GCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCAC 169995 || || || | ||||| ||||| || |||||||| |||||| | || || | | ||| Sbjct 371 GCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACAC 312 Query 169996 TTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGT 170055 ||| | | || | || ||| |||||| | |||||||||| | |||| | ||| Sbjct 311 TTCTTACTTGGTGTAGCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGT 252 Query 170056 ATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTC 170115 ||||| |||||||| ||| |||||||| ||||| || |||| || ||||| ||| Sbjct 251 ATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTC 192 Query 170116 TTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGT 170175 || | || || | ||||| ||| || || ||||| ||||||||||| ||||| ||| Sbjct 191 TTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGT 132 Query 170176 ACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCAT 170235 || || ||||||||| | ||||||||||| ||||||||||| |||||||||||||| || Sbjct 131 ACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCAC 72 Query 170236 ATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTT 170295 ||| ||| || |||||| | || || || | || ||| || ||||| ||||| | Sbjct 71 ATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTG 12 Query 170296 GTAACATCT 170304 ||||| ||| Sbjct 11 GTAACCTCT 3 >seq929 Length=1222 Score = 306 bits (338), Expect = 4e-78 Identities = 410/569 (72%), Gaps = 1/569 (0%) Strand=Plus/Plus Query 169697 ATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCC 169756 ||||| |||| ||||| | ||||| | || |||| ||||| ||||| |||||||||| Sbjct 644 ATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCC 703 Query 169757 CATGTCTATTAGCAGCAGCAACCTGCTTTATCGTT-GCTTTCATCGCAGCTCCACCTGTG 169815 | | |||| | ||| | | ||||| || |||||||| || || || || || Sbjct 704 CTACTTTATTGACCGCAACTTCTGTATTTATTATTAGCTTTCATTGCTGCACCTCCGGTA 763 Query 169816 GACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATC 169875 || || ||||| || | |||||||| | || || || | || || ||||| || || Sbjct 764 GATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATT 823 Query 169876 TCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAA 169935 || ||||| || | || |||| || || ||| | ||||| || || || |||||| Sbjct 824 TCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAA 883 Query 169936 GCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCAC 169995 || || || | ||||| ||||| || |||||||| |||||| | || || | | ||| Sbjct 884 GCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACAC 943 Query 169996 TTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGT 170055 ||| | | || | || ||| |||||| | |||||||||| | |||| | ||| Sbjct 944 TTCTTACTTGGTGTAGCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGT 1003 Query 170056 ATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTC 170115 ||||| |||||||| ||| |||||||| ||||| || |||| || ||||| ||| Sbjct 1004 ATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTC 1063 Query 170116 TTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGT 170175 || | || || | ||||| ||| || || ||||| ||||||||||| ||||| ||| Sbjct 1064 TTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGT 1123 Query 170176 ACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCAT 170235 || || ||||||||| | ||||||||||| ||||||||||| |||||||||||||| || Sbjct 1124 ACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCAC 1183 Query 170236 ATGGCAGGGGTTGCTGGTATGTTCGGAGG 170264 ||| ||| || |||||| | || || || Sbjct 1184 ATGCTAGGTGTGGCTGGTGTATTTGGCGG 1212 >seq2704 Length=1012 Score = 140 bits (154), Expect = 4e-28 Identities = 212/302 (70%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 169697 ATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCC 169756 ||||| |||| ||||| | ||||| | || |||| ||||| ||||| |||||||||| Sbjct 685 ATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCC 744 Query 169757 CATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGG 169816 | | |||| | ||| | | ||||| |||||||||| || || || || || | Sbjct 745 CTACTTTATTGACCGCAACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAG 804 Query 169817 ACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCT 169876 | || ||||| || | |||||||| | || || || | || || ||||| || || | Sbjct 805 ATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTT 864 Query 169877 CTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAG 169936 | ||||| || | || |||| || || ||| | ||||| || || || ||||||| Sbjct 865 CCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAG 924 Query 169937 CAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACT 169996 | || || | ||||| ||||| || |||||||| |||||| | || || | | |||| Sbjct 925 CGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACT 984 Query 169997 TC 169998 || Sbjct 985 TC 986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582825793491200