Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq3048 592 2e-164 seq838 360 2e-94 seq2823 349 4e-91 seq929 342 6e-89 seq2704 167 3e-36 >seq3048 Length=155691 Score = 592 bits (656), Expect = 2e-164 Identities = 719/974 (74%), Gaps = 4/974 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||| ||||| || |||||||| ||||| |||||||||||||| || || || | Sbjct 447 GGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCGCGGTTGATA 506 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||||| ||| ||||| || | | |||||||| ||| Sbjct 507 ATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGATTGATTGAAATTA 566 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| | || || ||||| ||||| | ||| | ||| | ||||| || || || Sbjct 567 AAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTGAACCAGATACCTACT 626 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| ||||| ||||| | ||||||| ||||||||| |||||| ||| Sbjct 627 ACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 686 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || ||||| || || |||||||| ||||| || |||||| Sbjct 687 AAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTCTTGA 746 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||||| ||||| | ||| | | ||| Sbjct 747 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 806 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || || ||||||||||| || || Sbjct 807 GTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACACCT 866 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 | ||||||||| || |||||||||||||| || || || ||||| |||| |||| ||||| Sbjct 867 AGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTG 926 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| || ||||| || ||||| || | || || Sbjct 927 AAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGGTAG 986 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| || Sbjct 987 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGG 1046 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAA-ATGCACCAAT 84643 |||||||| ||||| | ||||||||| ||||||||||| | ||||| | |||||| Sbjct 1047 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATAT-AGCAAGCTACACCAAG 1105 Query 84644 CAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACT 84703 | |||||| | |||| || | |||||| ||||| || |||| |||||| || | | Sbjct 1106 TAAGAAGTGTAGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGA 1165 Query 84704 TGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGC 84763 || |||||||| || || || || || | ||| ||||| ||| | || | | ||| Sbjct 1166 AGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGC 1225 Query 84764 ACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTC 84823 ||| ||||| || ||||||||||| | | ||| |||| || || ||||| ||||| || Sbjct 1226 ACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATC 1285 Query 84824 AATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTA 84882 |||||| || || |||||| ||| ||| ||||| || || ||||| ||| || | | || Sbjct 1286 AATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGA-AGTTGCGGTCAATA 1344 Query 84883 GAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGA 84942 ||| || ||||| | | |||||||| |||| || | |||||| | ||| ||| | Sbjct 1345 AAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTA 1404 Query 84943 CCCAATCACAGAAG 84956 ||||| ||| ||| Sbjct 1405 TCCAATTACAAAAG 1418 >seq838 Length=1002 Score = 360 bits (398), Expect = 2e-94 Identities = 455/619 (74%), Gaps = 5/619 (1%) Strand=Plus/Plus Query 84341 AGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAAC 84400 ||| || || | ||||||||||| ||| |||||| | || || ||||||||||| || Sbjct 3 AGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCAC 62 Query 84401 TCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTA 84460 || | ||||||||| || |||||||||||||| || || || ||||| |||| |||| | Sbjct 63 ACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAA 122 Query 84461 GTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGG 84520 |||||| || || ||||| || || ||||| || ||||| || ||||| || | || Sbjct 123 GTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGG 182 Query 84521 ATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCA 84580 || | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| Sbjct 183 GTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCA 242 Query 84581 TGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAA-ATGCAC 84639 || |||||||| ||||| | ||||||||| ||||||||||| | ||||| | ||| Sbjct 243 AGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATAT-AGCAAGCTACAC 301 Query 84640 CAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCA 84699 ||| | |||||| | |||| || | |||||| ||||| || |||| |||||| || | Sbjct 302 CAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAA 361 Query 84700 TACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTA 84759 | || |||||||| || || || || || | ||| ||||| ||| | || | | Sbjct 362 CAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAA 421 Query 84760 CGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCT-CACGGATA 84818 |||||| ||||| || ||||||||||| | | ||| |||| || || | |||| ||| Sbjct 422 TGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTACACGAATA 481 Query 84819 CCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGC 84877 || |||||||| || || |||||| ||| ||| ||||| || || ||||| ||| || | Sbjct 482 CCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGA-AGTTGCGGT 540 Query 84878 AAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGA 84937 | || ||| || ||||| | | |||||||| |||| || | |||||| | ||| Sbjct 541 CAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCT 600 Query 84938 GGTGACCCAATCACAGAAG 84956 ||| | ||||| ||| ||| Sbjct 601 GGTTATCCAATTACAAAAG 619 >seq2823 Length=1025 Score = 349 bits (386), Expect = 4e-91 Identities = 391/520 (75%), Gaps = 2/520 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGG-CACGATTAAG 84043 ||||| ||||| || |||||||| ||||| |||||||||||||| | | || || | Sbjct 542 GGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTAGTCGCGGTTGAT 483 Query 84044 TACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTT 84103 | ||| ||||| ||||| | ||||| ||| ||||| || | | |||||||| || Sbjct 482 AATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGATTGATTGAAATT 423 Query 84104 AAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAAC 84163 ||| ||||| | || || ||||| ||||| | ||| | ||| | ||||| || || || Sbjct 422 AAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTGAACCAGATACCTAC 363 Query 84164 CACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTG 84223 || ||||||||||| ||||| ||||| | ||||||| ||||||||| |||||| || Sbjct 362 TACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCATATTG 303 Query 84224 GAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTG 84283 |||||| | || || || || || ||||| || || |||||||| ||||| || ||||| Sbjct 302 GAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAGGTTTCTTCCTCTTG 243 Query 84284 ACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGA 84343 |||||| ||||||| | || || |||||||||| ||||| | ||| | | ||| Sbjct 242 ACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGA 183 Query 84344 AGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCC 84403 || || | ||||||||||| ||| |||||| | || || ||||||||||| || || Sbjct 182 GGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACACC 123 Query 84404 CAACATGT-GAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGT 84462 | ||||| |||| || |||||||||||||| || || || ||||| |||| |||| ||| Sbjct 122 TAGCATGTAGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGT 63 Query 84463 TGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAA 84502 |||| || || ||||| || || ||||| || ||||| || Sbjct 62 TGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAA 23 >seq929 Length=1222 Score = 342 bits (378), Expect = 6e-89 Identities = 433/589 (74%), Gaps = 5/589 (1%) Strand=Plus/Minus Query 84371 GAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGAT 84430 |||||| | || || ||||||||||| || || | ||||||||| || ||||||||||| Sbjct 1222 GAATAGGGAACCGCCAAATACACCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGAT 1163 Query 84431 GTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCAT 84490 ||| || || || ||||| |||| |||| ||||||| || || ||||| || || ||||| Sbjct 1162 GTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCAT 1103 Query 84491 GCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGC 84550 || ||||| || ||||| || | || || | | ||| ||||||| || ||||| Sbjct 1102 ACCGTCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGC 1043 Query 84551 AACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTC 84610 ||| ||||| || || |||||| ||||| || |||||||| ||||| | |||||| Sbjct 1042 AACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTC 983 Query 84611 CCATTCACGACCCATGTAAGCAAA-TGCACCAATCAGGAAGTGAAAGACAACAAGTTGAT 84669 ||| ||||||||||| || |||| | |||||| | |||||| | |||| || | || Sbjct 982 CCACTCACGACCCATATA-GCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCAT 924 Query 84670 AAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAAT 84729 |||| ||||| || |||| |||||| || | | || |||||||| || || || || | Sbjct 923 AAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGT 864 Query 84730 GTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACA 84789 | | ||| ||||| ||| | || | | |||||| ||||| || ||||||||||| | Sbjct 863 GCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAA 804 Query 84790 TGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGA 84849 | ||| |||| || || ||||| ||||| |||||||| || || |||||| ||| || Sbjct 803 GTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGA 744 Query 84850 ATGC-AATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAA 84907 | || ||| || || ||||| ||| || | | || ||| || ||||| | | ||||| Sbjct 743 AAGCTAATAATAAATACAGA-AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAA 685 Query 84908 CCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 ||| |||| || | |||||| | ||| ||| | ||||| ||| ||| Sbjct 684 CCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAATTACAAAAG 636 >seq2704 Length=1012 Score = 167 bits (184), Expect = 3e-36 Identities = 243/338 (72%), Gaps = 4/338 (1%) Strand=Plus/Minus Query 84621 CCCATGTAAGCAAA-TGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACC 84679 ||||| || |||| | |||||| | |||||| | |||| || | |||||| ||||| Sbjct 1012 CCCATATA-GCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCACC 954 Query 84680 ATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAAT 84739 || |||| |||||| || | | || |||||||| || || || || || | ||| || Sbjct 953 GTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTAT 894 Query 84740 AGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACC 84799 ||| ||| | || | | |||||| ||||| || ||||||||||| | | ||| || Sbjct 893 AGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCC 834 Query 84800 AGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGAT 84859 || || || ||||| ||||| |||||||| || || |||||| ||| ||| ||||| || Sbjct 833 AGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAAT 774 Query 84860 GAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACAT 84918 || ||||| ||| || | | || ||| || ||||| | | |||||||| |||| | Sbjct 773 AAATACAGA-AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGT 715 Query 84919 AGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 | | |||||| | ||| ||| | ||||| ||| ||| Sbjct 714 AAAGACGGTTTTCGGTGCTGGTTATCCAATTACAAAAG 677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571251834475840