Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq3048 471 1e-128 seq838 295 2e-75 seq2823 284 4e-72 seq929 279 2e-70 seq2704 161 3e-35 >seq3048 Length=155691 Score = 471 bits (522), Expect = 1e-128 Identities = 702/987 (71%), Gaps = 8/987 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 |||||| | ||| | || || || || |||||||| || | |||||||| || || | Sbjct 1417 TTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1358 Query 25862 ATGATACCCTGCTTACTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCAC 25919 ||||| |||| ||| | | | || ||| | ||| ||||| |||| ||||| || |||| Sbjct 1357 ATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTATTGCTTTCATTGCTGCAC 1300 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | || |||||||| ||||| || ||||| || ||||| || || ||| | |||||||||| Sbjct 1299 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACA 1240 Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039 |||| || || || || | |||| | ||| || || || | || |||||||| | Sbjct 1239 ATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAA 1180 Query 26040 TCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 | |||||||| | | | || || ||| ||||||| || || || ||| | || ||| Sbjct 1179 TATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTG 1120 Query 26100 TCTTCCACTTCTTAATAGGAGTAGCA-GC-ATATGCAGGGAGACAGTGGGAACTATCTTA 26157 | | ||||||||| | || ||||| || ||||| || | |||||||||| || Sbjct 1119 TTCTACACTTCTTACTTGGTGTAGCTTGCTATATG--GGTCGTGAGTGGGAACTTAGTTT 1062 Query 26158 CAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCT 26217 | | || || ||| | || ||||| |||||||||| |||| || | | || ||| Sbjct 1061 CCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 1002 Query 26218 CGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGG 26277 || || ||||| | || || | || ||||| || ||| ||| || |||||||| || Sbjct 1001 TGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGG 942 Query 26278 TATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCA 26337 |||||||||||||| ||||| ||| | ||||||||||| || || || || || ||||| Sbjct 941 AATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCA 882 Query 26338 CCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCA 26397 |||||| || ||| ||||| ||||| || || || || | || ||| ||||||||| Sbjct 881 CCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCA 822 Query 26398 CGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTA 26457 || |||||| || || | || ||||| ||||| | | || ||| | Sbjct 821 TGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 762 Query 26458 TGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTT 26517 || || | || || ||||| ||||| || |||||||| || || || || || || || Sbjct 761 AGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTT 702 Query 26518 TGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCT 26577 ||| |||| || || || ||||| ||||| || || |||||| | || ||||| | Sbjct 701 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTT 642 Query 26578 TGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATT 26637 ||| ||||||| || || || || ||| | || || | |||||| |||| ||||| || Sbjct 641 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTT 582 Query 26638 TAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACC 26697 ||| ||||||||||||| || || || || ||||| ||| | | || |||| Sbjct 581 CAACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAA 522 Query 26698 TACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAA 26757 ||| ||||||||| | | ||||| ||||| || || | ||||||||||| || ||||| Sbjct 521 TACTTGGGCTGATATTATCAACCGCGCTAATCTTGGTATGGAAGTTATGCATGAACGTAA 462 Query 26758 TGCTCATAACTTTCCACTTGACTTAGC 26784 ||||||||| || || || ||| |||| Sbjct 461 TGCTCATAATTTCCCTCTAGACCTAGC 435 >seq838 Length=1002 Score = 295 bits (326), Expect = 2e-75 Identities = 443/619 (72%), Gaps = 9/619 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 |||||| | ||| | || || || || |||||||| || | |||||||| || || | Sbjct 618 TTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 559 Query 25862 ATGATACCCTGCTTACTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCAC 25919 ||||| |||| ||| | | | || ||| | ||| ||||| |||| ||||| || |||| Sbjct 558 ATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTATTGCTTTCATTGCTGCAC 501 Query 25920 CGCCTGTAGATATAGATGGCATACGTG-AGCCAGTTTCCGGCTCGTTAATGTACGGAAAC 25978 | || |||||||| ||||| || |||| | || ||||| || || ||| | ||||||||| Sbjct 500 CTCCGGTAGATATTGATGGTATTCGTGTAACCTGTTTCTGGATCTTTACTTTACGGAAAC 441 Query 25979 AATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCG 26038 ||||| || || || || | |||| | ||| || || || | || |||||||| Sbjct 440 AATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCA 381 Query 26039 ATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATT 26098 || |||||||| | | | || || ||| ||||||| || || || ||| | || ||| Sbjct 380 ATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATT 321 Query 26099 ATCTTCCACTTCTTAATAGGAGTAGCA-GC-ATATGCAGGGAGACAGTGGGAACTATCTT 26156 | | ||||||||| | || ||||| || ||||| || | |||||||||| || Sbjct 320 GTTCTACACTTCTTACTTGGTGTAGCTTGCTATATG--GGTCGTGAGTGGGAACTTAGTT 263 Query 26157 ACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTC 26216 | | || || ||| | || ||||| |||||||||| |||| || | | || ||| Sbjct 262 TCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTA 203 Query 26217 TCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTG 26276 || || ||||| | || || | || ||||| || ||| ||| || |||||||| | Sbjct 202 CTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAG 143 Query 26277 GTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGC 26336 | |||||||||||||| ||||| ||| | ||||||||||| || || || || || |||| Sbjct 142 GAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGC 83 Query 26337 ACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGC 26396 ||||||| || ||| ||||| ||||| || || || || | || ||| |||||||| Sbjct 82 ACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGC 23 Query 26397 ACGGAAGTTTGGTTACTTC 26415 | || |||||| || || Sbjct 22 ATGGTTCTTTGGTAACCTC 4 >seq2823 Length=1025 Score = 284 bits (314), Expect = 4e-72 Identities = 391/544 (72%), Gaps = 2/544 (0%) Strand=Plus/Plus Query 26243 GGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATG 26302 || ||||| || ||| ||| || |||||||| || |||||||||||||| ||||| ||| Sbjct 11 GGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATG 70 Query 26303 TTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCC-ATATGGCTGGTGTTGC 26361 | ||||||||||| || || || || || ||||||||||| | | ||| ||||| || Sbjct 71 ATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCTACATGCTAGGTGTGGC 130 Query 26362 TGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACT 26421 ||| || || || || | || ||| ||||||||| || |||||| || || | Sbjct 131 TGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTT 190 Query 26422 TATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGA 26481 || ||||| ||||| | | || ||| | || || | || || ||||| || Sbjct 191 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGA 250 Query 26482 AGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGC 26541 ||| || |||||||| || || || || || || ||||| |||| || || || ||||| Sbjct 251 AGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 310 Query 26542 GAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCAT 26601 ||||| || || |||||| | || ||||| | ||| ||||||| || || || || Sbjct 311 TAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTAT 370 Query 26602 ATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAA 26661 ||| | || || | |||||| |||| ||||| || ||| ||||||||||||| || || Sbjct 371 CTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAA 430 Query 26662 CCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCG 26721 || || ||||| ||| | | || |||| ||| ||||||||| | | ||||| Sbjct 431 TCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATCAACCG 490 Query 26722 AG-CTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACT 26780 | |||| || || | ||||||||||| || |||||||||||||| || || || ||| Sbjct 491 CGACTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACC 550 Query 26781 TAGC 26784 |||| Sbjct 551 TAGC 554 >seq929 Length=1222 Score = 279 bits (308), Expect = 2e-70 Identities = 416/580 (72%), Gaps = 9/580 (2%) Strand=Plus/Plus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 |||||| | ||| | || || || || |||||||| || | |||||||| || || | Sbjct 637 TTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 696 Query 25862 ATGATACCCTGCTTACTCG-CAGCCACTACATGT-TTTATACTT-GCCTTCATCGCAGCA 25918 ||||| |||| ||| | | | || ||| | ||| ||||| || || ||||| || ||| Sbjct 697 ATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTATTAGCTTTCATTGCTGCA 754 Query 25919 CCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAAC 25978 || || |||||||| ||||| || ||||| || ||||| || || ||| | ||||||||| Sbjct 755 CCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAAC 814 Query 25979 AATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCG 26038 ||||| || || || || | |||| | ||| || || || | || |||||||| Sbjct 815 AATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCA 874 Query 26039 ATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATT 26098 || |||||||| | | | || || ||| ||||||| || || || ||| | || ||| Sbjct 875 ATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATT 934 Query 26099 ATCTTCCACTTCTTAATAGGAGTAGC-AGC-ATATGCAGGGAGACAGTGGGAACTATCTT 26156 | | ||||||||| | || ||||| || ||||| || | |||||||||| || Sbjct 935 GTTCTACACTTCTTACTTGGTGTAGCTTGCTATATG--GGTCGTGAGTGGGAACTTAGTT 992 Query 26157 ACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTC 26216 | | || || ||| | || ||||| |||||||||| |||| || | | || ||| Sbjct 993 TCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTA 1052 Query 26217 TCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTG 26276 || || ||||| | || || | || ||||| || ||| ||| || |||||||| | Sbjct 1053 CTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAG 1112 Query 26277 GTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGC 26336 | |||||||||||||| ||||| ||| | ||||||||||| || || || || || |||| Sbjct 1113 GAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGC 1172 Query 26337 ACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGG 26376 ||||||| || ||| ||||| ||||| || || || || Sbjct 1173 ACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGG 1212 >seq2704 Length=1012 Score = 161 bits (178), Expect = 3e-35 Identities = 234/325 (72%), Gaps = 4/325 (1%) Strand=Plus/Plus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 |||||| | ||| | || || || || |||||||| || | |||||||| || || | Sbjct 678 TTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 737 Query 25862 ATGATACCCTGCTTACTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCAC 25919 ||||| |||| ||| | | | || ||| | ||| ||||| |||| ||||| || |||| Sbjct 738 ATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTATTGCTTTCATTGCTGCAC 795 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | || |||||||| ||||| || ||||| || ||||| || || ||| | |||||||||| Sbjct 796 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACA 855 Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039 |||| || || || || | |||| | ||| || || || | || |||||||| | Sbjct 856 ATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAA 915 Query 26040 TCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 | |||||||| | | | || || ||| ||||||| || || || ||| | || ||| Sbjct 916 TATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTG 975 Query 26100 TCTTCCACTTCTTAATAGGAGTAGC 26124 | | ||||||||| | || ||||| Sbjct 976 TTCTACACTTCTTACTTGGTGTAGC 1000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146721089237952