Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq3048 533 4e-147 seq838 345 1e-90 seq929 334 2e-87 seq2823 306 1e-78 seq2704 163 9e-36 seq672 86.0 2e-12 >seq3048 Length=155691 Score = 533 bits (590), Expect = 4e-147 Identities = 716/995 (72%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| |||| |||||||| || ||||| || || || ||||| ||||||||||||||||| Sbjct 426 TCAACAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 485 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 36083 || | | || ||||| | ||| ||||||||||| | || | || | |||| Sbjct 486 CCAAGATTAGCGCGGTTGATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCA 545 Query 36084 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 36143 || || || |||||||| ||||| || || | || |||||||||||| || || | | Sbjct 546 ACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAA 605 Query 36144 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTA 36203 ||||| | ||| || | || ||||||||||| | |||||| |||||| || | Sbjct 606 GCGGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAA 665 Query 36204 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 36263 || || || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 666 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 725 Query 36264 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 36323 ||||| || ||||| ||||| |||||| | || || | || ||||||| | || Sbjct 726 TTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 785 Query 36324 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 36383 ||||| | || | || || || | | || ||||||||| ||||| | || Sbjct 786 GTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCG 845 Query 36384 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 36443 || ||||| || || ||||| ||||| || || || ||||||||||| ||||| || || Sbjct 846 CCAAATACACCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCT 905 Query 36444 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 36503 || || |||| ||| || |||||||| || || || || ||||||||||| ||||| || Sbjct 906 TGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAG 965 Query 36504 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 36563 || ||||| |||| ||||||| ||||| |||||| || ||||||||||| |||||| Sbjct 966 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAA 1025 Query 36564 TAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 36623 || || ||| ||||| || | |||||| || | ||||||||||||| | || ||| Sbjct 1026 TATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCC 1085 Query 36624 A---AGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCG 36680 | || ||||| | ||||| | ||||| | ||||| || | ||| || || ||| Sbjct 1086 ATATAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCACCG 1142 Query 36681 TTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATT 36740 || |||||||| || || | | || |||||||| |||||||| ||||| | ||| || Sbjct 1143 TTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATA 1202 Query 36741 GCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCT 36800 || || | |||| || || || || || || |||||||| || ||||| | ||| Sbjct 1203 GCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCA 1262 Query 36801 GAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAA 36860 || ||||| |||||||||||||| ||||| || ||||| ||||||| || ||||| | | Sbjct 1263 GAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATA 1322 Query 36861 AATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAG 36920 ||| | | ||| || || | | ||||||||| | || |||||||| || | || Sbjct 1323 AATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAA 1382 Query 36921 AGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 || ||||| | || || || | ||| | ||| || Sbjct 1383 AGACGGTTTTCGGTGCTGGTTATCCAATTACAAAA 1417 >seq838 Length=1002 Score = 345 bits (382), Expect = 1e-90 Identities = 440/603 (73%), Gaps = 7/603 (1%) Strand=Plus/Plus Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || ||||||||| ||||| | || || ||||| || || ||||| ||||| || || Sbjct 19 CCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACACCTAGCATGTGAAAT 78 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476 || ||||||||||| ||||| || || || || |||| ||| || |||||||| || || Sbjct 79 GGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAGTACCAGAG 138 Query 36477 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 36536 || || ||||||||||| ||||| || || ||||| |||| ||||||| ||||| ||| Sbjct 139 ATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACA 198 Query 36537 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGT 36596 ||| || ||||||||||| |||||||| || ||| ||||| || | |||||| || Sbjct 199 GCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGA 258 Query 36597 CTATAACTAAGTTCCCATTGTCGTCCCA---AGTAAGCTGAGATACCAATGAGAAAGTGG 36653 | ||||||||||||| | || |||| || ||||| | ||||| | ||||| Sbjct 259 CGGAAACTAAGTTCCCACTCACGACCCATATAGCAAGCT---ACACCAAGTAAGAAGTGT 315 Query 36654 AACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCC 36713 | ||||| || | ||| || || ||||| |||||||| || || | | || |||||| Sbjct 316 AGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCC 375 Query 36714 CAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATG 36773 || |||||||| ||||| | ||| || || || | |||| || || || || || Sbjct 376 CATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATA 435 Query 36774 ATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCT-CACGAATACCATCTATATCCAC 36832 || |||||||| || ||||| | ||| || ||||| | ||||||||||||| ||||| || Sbjct 436 ATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTACACGAATACCATCAATATCTAC 495 Query 36833 GGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGAT 36892 ||||| ||||||| || ||||| | |||| | | ||| || || | | |||||| Sbjct 496 CGGAGGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGAT 555 Query 36893 CATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACA 36952 ||| | || |||||||| || | || || ||||| | || || || | ||| | ||| Sbjct 556 CATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAATTACA 615 Query 36953 TAA 36955 || Sbjct 616 AAA 618 >seq929 Length=1222 Score = 334 bits (370), Expect = 2e-87 Identities = 423/579 (73%), Gaps = 7/579 (1%) Strand=Plus/Minus Query 36381 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 36440 || || ||||| || || ||||| ||||| || || || ||||||||||| ||||| || Sbjct 1212 CCGCCAAATACACCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 1153 Query 36441 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 36500 || || || |||| ||| || |||||||| || || || || ||||||||||| ||||| Sbjct 1152 GCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAA 1093 Query 36501 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCT 36560 || || ||||| |||| ||||||| ||||| |||||| || ||||||||||| ||| Sbjct 1092 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 1033 Query 36561 GAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGT 36620 ||||| || ||| ||||| || | |||||| || | ||||||||||||| | || Sbjct 1032 GAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGA 973 Query 36621 CCCA---AGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCT 36677 |||| || ||||| | ||||| | ||||| | ||||| || | ||| || || Sbjct 972 CCCATATAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCA 916 Query 36678 CCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCG 36737 ||||| |||||||| || || | | || |||||||| |||||||| ||||| | ||| Sbjct 915 CCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCT 856 Query 36738 ATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCT 36797 || || || | |||| || || || || || || |||||||| || ||||| | | Sbjct 855 ATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGAT 796 Query 36798 CCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGC-AAT 36856 || || ||||| |||||||||||||| ||||| || ||||| ||||||| || || ||| Sbjct 795 CCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCTAAT 736 Query 36857 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCAC 36916 | |||| | | ||| || || | | ||||||||| | || |||||||| || | Sbjct 735 AATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAAT 676 Query 36917 ATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 || || ||||| | || || || | ||| | ||| || Sbjct 675 GTAAAGACGGTTTTCGGTGCTGGTTATCCAATTACAAAA 637 >seq2823 Length=1025 Score = 306 bits (338), Expect = 1e-78 Identities = 407/563 (72%), Gaps = 2/563 (0%) Strand=Plus/Minus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| |||| |||||||| || ||||| || || || ||||| ||||||||||||||||| Sbjct 563 TCAACAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 504 Query 36024 CCTA-AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATC 36082 || | | | | | ||||| | ||| ||||||||||| | || | || | ||| Sbjct 503 CCAAGATTAGTCGCGGTTGATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATC 444 Query 36083 AACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCAT 36142 ||| || || |||||||| ||||| || || | || |||||||||||| || || | Sbjct 443 AACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAA 384 Query 36143 AGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCT 36202 |||||| | ||| || | || ||||||||||| | |||||| |||||| || Sbjct 383 AGCGGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGA 324 Query 36203 ATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 36262 ||| || || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 323 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGAT 264 Query 36263 GTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGT 36322 ||||| || ||||| ||||| |||||| | || || | || ||||||| | || Sbjct 263 ATTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 204 Query 36323 TGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCC 36382 ||||| | || | || || || | | || ||||||||| ||||| | || Sbjct 203 GGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACC 144 Query 36383 ACCGAATACCCCTGCAACACCGAGCATAT-GGAACGGATGCATAAGGATATTGTGTTCTG 36441 || ||||| || || ||||| ||||| | | || || ||||||||||| ||||| || | Sbjct 143 GCCAAATACACCAGCCACACCTAGCATGTAGAAATGGGTGCATAAGGATGTTGTGCTCAG 84 Query 36442 CCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGA 36501 | || || |||| ||| || |||||||| || || || || ||||||||||| ||||| | Sbjct 83 CTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAA 24 Query 36502 AACTCCCTTGTCCAAAAGGGTAG 36524 | || ||||| |||| |||||| Sbjct 23 AGCTTCCTTGACCAATTGGGTAG 1 >seq2704 Length=1012 Score = 163 bits (180), Expect = 9e-36 Identities = 221/308 (72%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 36648 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 36707 ||||| | ||||| || | ||| || || ||||| |||||||| || || | | || Sbjct 985 AAGTGTAGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCC 926 Query 36708 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCA 36767 |||||||| |||||||| ||||| | ||| || || || | |||| || || || Sbjct 925 GCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCG 866 Query 36768 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 36827 || || || |||||||| || ||||| | ||| || ||||| |||||||||||||| ||| Sbjct 865 GAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATA 806 Query 36828 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCA 36887 || || ||||| ||||||| || ||||| | |||| | | ||| || || | | | Sbjct 805 TCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGCGGTCAATAAAGTA 746 Query 36888 GGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAG 36947 |||||||| | || |||||||| || | || || ||||| | || || || | ||| Sbjct 745 GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAA 686 Query 36948 TCACATAA 36955 | ||| || Sbjct 685 TTACAAAA 678 >seq672 Length=1075 Score = 86.0 bits (94), Expect = 2e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| |||| |||||||| || ||||| || || || ||||| ||||||||||||||||| Sbjct 958 TCAACAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 1017 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGT 36058 || | | || ||||| | ||| ||||||||||| Sbjct 1018 CCAAGATTAGCGCGGTTGATAATATCAGCCCAAGT 1052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150448954302992