Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq3048 536 4e-148 seq929 333 8e-87 seq2823 331 3e-86 seq838 331 3e-86 seq2704 154 4e-33 seq672 91.5 4e-14 >seq3048 Length=155691 Score = 536 bits (594), Expect = 4e-148 Identities = 719/996 (72%), Gaps = 8/996 (1%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| ||||| || || ||||| || |||||||| ||||| ||||| ||||||||| Sbjct 426 TCAACAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 485 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCA 5305 ||||| || || ||||| | | ||| |||||||| || | | ||| | ||| Sbjct 486 CCAAGATTAGCGCGGTTGATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCA 545 Query 5306 ACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATA 5365 || || || |||||||| ||||| || || | || |||||||||||| ||| || | | Sbjct 546 ACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAA 605 Query 5366 GAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTA 5425 | ||| | ||| || | || || ||||||| ||| | |||||| |||||| ||| | Sbjct 606 GCGGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAA 665 Query 5426 TTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 5485 ||||| || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 666 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 725 Query 5486 TTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTT 5545 ||||| |||||||||||||| |||||| | || || | || ||| | | || Sbjct 726 TTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 785 Query 5546 GTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCA 5605 ||||| | || | ||| || || | | |||||||||||| ||| | | || Sbjct 786 GTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCG 845 Query 5606 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCC 5665 || ||||| ||||| ||||| |||||||| || || ||||||||||| ||||| || || Sbjct 846 CCAAATACACCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCT 905 Query 5666 TGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA 5725 |||||||| | ||| ||||| |||||||||||||| || ||||||||||| ||| || Sbjct 906 TGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAG 965 Query 5726 CTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGA 5784 ||||| || || | ||||| | || || || | |||| || || ||||| || ||||| Sbjct 966 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTGA 1024 Query 5785 ATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCC 5844 |||||| || |||||| || ||||| || | | | ||||||||||||| | || || Sbjct 1025 ATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 1084 Query 5845 CA---AGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCC 5901 || || ||||| | ||||| | |||||| | || | || | || || || || Sbjct 1085 CATATAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCACC 1141 Query 5902 ATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAAT 5961 ||||| | ||||||||| | | || |||||||| || || || ||||| || || || Sbjct 1142 GTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTAT 1201 Query 5962 TGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCC 6021 || || | || | || ||| || || || || |||||||| || |||| |||||| Sbjct 1202 AGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCC 1261 Query 6022 TGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATAT 6081 | || |||||||| || || || || || || || |||||||| | ||| || | || Sbjct 1262 AGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAAT 1321 Query 6082 AAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATA 6141 |||| ||| ||||||||| || | | || ||||| || ||||||||||| || | || Sbjct 1322 AAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTA 1381 Query 6142 GAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || ||||| | |||||| || | ||| | ||| || Sbjct 1382 AAGACGGTTTTCGGTGCTGGTTATCCAATTACAAAA 1417 >seq929 Length=1222 Score = 333 bits (368), Expect = 8e-87 Identities = 425/580 (73%), Gaps = 9/580 (2%) Strand=Plus/Minus Query 5603 CCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCT 5662 || || ||||| ||||| ||||| |||||||| || || ||||||||||| ||||| || Sbjct 1212 CCGCCAAATACACCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 1153 Query 5663 GCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTG 5722 || |||||||| | ||| ||||| |||||||||||||| || ||||||||||| ||| Sbjct 1152 GCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAA 1093 Query 5723 AAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGC 5781 || ||||| || || | ||||| | || || || | ||||| | || ||||| || || Sbjct 1092 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAG-CAGCTGCAACAGGAGC 1034 Query 5782 TGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCG 5841 ||||||||| || |||||| || ||||| || | | | ||||||||||||| | || Sbjct 1033 TGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACG 974 Query 5842 TCCCA---AGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCC 5898 |||| || ||||| | ||||| | |||||| | || | || | || || || Sbjct 973 ACCCATATAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCC 917 Query 5899 TCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCC 5958 || ||||| | ||||||||| | | || |||||||| || || || ||||| || || Sbjct 916 ACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACC 857 Query 5959 AATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGA 6018 || || || | || | || ||| || || || || |||||||| || |||| ||| Sbjct 856 TATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGA 797 Query 6019 TCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAA 6078 ||| | || |||||||| || || || || || || || |||||||| | ||| ||||| Sbjct 796 TCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCTAA 737 Query 6079 T-ATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCA 6137 | |||||| ||| ||||||||| || | | || ||||| || ||||||||||| || | Sbjct 736 TAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAA 677 Query 6138 CATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || || ||||| | |||||| || | ||| | ||| || Sbjct 676 TGTAAAGACGGTTTTCGGTGCTGGTTATCCAATTACAAAA 637 >seq2823 Length=1025 Score = 331 bits (366), Expect = 3e-86 Identities = 412/562 (73%), Gaps = 2/562 (0%) Strand=Plus/Minus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| ||||| || || ||||| || |||||||| ||||| ||||| ||||||||| Sbjct 563 TCAACAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 504 Query 5246 CCAAGGTTGG-CACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTC 5304 ||||| || | | ||||| | | ||| |||||||| || | | ||| | || Sbjct 503 CCAAGATTAGTCGCGGTTGATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATC 444 Query 5305 AACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCAT 5364 ||| || || |||||||| ||||| || || | || |||||||||||| ||| || | Sbjct 443 AACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAA 384 Query 5365 AGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCT 5424 || ||| | ||| || | || || ||||||| ||| | |||||| |||||| ||| Sbjct 383 AGCGGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGA 324 Query 5425 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 5484 |||||| || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 323 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGAT 264 Query 5485 GTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGT 5544 ||||| |||||||||||||| |||||| | || || | || ||| | | || Sbjct 263 ATTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 204 Query 5545 TGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCC 5604 ||||| | || | ||| || || | | |||||||||||| ||| | | || Sbjct 203 GGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACC 144 Query 5605 ACCGAATACCCCAGCAACACCGAGCATGT-GGAACGGATGCATAAGGATATTGTGTTCTG 5663 || ||||| ||||| ||||| ||||||| | || || ||||||||||| ||||| || | Sbjct 143 GCCAAATACACCAGCCACACCTAGCATGTAGAAATGGGTGCATAAGGATGTTGTGCTCAG 84 Query 5664 CCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGA 5723 | |||||||| | ||| ||||| |||||||||||||| || ||||||||||| ||| | Sbjct 83 CTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAA 24 Query 5724 AACTTCCCTGTCCGAAAGGGTA 5745 | ||||| || || | ||||| Sbjct 23 AGCTTCCTTGACCAATTGGGTA 2 >seq838 Length=1002 Score = 331 bits (366), Expect = 3e-86 Identities = 439/604 (73%), Gaps = 9/604 (1%) Strand=Plus/Plus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 |||||||||||| ||| | | || || ||||| ||||| ||||| |||||||| || Sbjct 19 CCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACACCTAGCATGTGAAAT 78 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 || ||||||||||| ||||| || || |||||||| | ||| ||||| |||||||||||| Sbjct 79 GGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAGTACCAGAG 138 Query 5699 ATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACT 5758 || || ||||||||||| ||| || ||||| || || | ||||| | || || || Sbjct 139 ATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACA 198 Query 5759 G-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAA 5817 | |||| || || ||||| || ||||||||||| || |||||| || ||||| || | Sbjct 199 GCAGTA-GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAG 257 Query 5818 TCTGTAACTAAGTTCCCATTGGCGTCCCA---AGTAAGCTGCGATACCAATAAGGAAGTG 5874 | | ||||||||||||| | || |||| || ||||| | ||||| | |||||| Sbjct 258 ACGGAAACTAAGTTCCCACTCACGACCCATATAGCAAGCT---ACACCAAGTAAGAAGTG 314 Query 5875 GAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTC 5934 | || | || | || || || || ||||| | ||||||||| | | || ||||| Sbjct 315 TAGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTC 374 Query 5935 CCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATAT 5994 ||| || || || ||||| || || || || || | || | || ||| || || || Sbjct 375 CCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAAT 434 Query 5995 GATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTT-CACGTATGCCGTCGATGTCGA 6053 || |||||||| || |||| |||||| | || |||| |||| || || || || || | Sbjct 435 AATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTACACGAATACCATCAATATCTA 494 Query 6054 CTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTA 6113 | || |||||||| | ||| || | |||||| ||| ||||||||| || | | || | Sbjct 495 CCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGA 554 Query 6114 TCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCAC 6173 |||| || ||||||||||| || | || || ||||| | |||||| || | ||| | || Sbjct 555 TCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAATTAC 614 Query 6174 AGAA 6177 | || Sbjct 615 AAAA 618 >seq2704 Length=1012 Score = 154 bits (170), Expect = 4e-33 Identities = 225/318 (71%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 5860 ACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATC 5919 ||||| | |||||| | || | || | || || || || ||||| | ||||||||| Sbjct 995 ACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATC 936 Query 5920 GAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTAC 5979 | | || |||||||| || || || ||||| || || || || || | || | Sbjct 935 AACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGAT 876 Query 5980 AACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTAT 6039 || ||| || || || || |||||||| || |||| |||||| | || |||||||| || Sbjct 875 AATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAAT 816 Query 6040 GCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGT 6099 || || || || || || |||||||| | ||| || | |||||| ||| ||||||||| Sbjct 815 ACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGCGGT 756 Query 6100 TAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCT 6159 || | | || ||||| || ||||||||||| || | || || ||||| | |||||| Sbjct 755 CAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCT 696 Query 6160 AGTAACCCAGTCACAGAA 6177 || | ||| | ||| || Sbjct 695 GGTTATCCAATTACAAAA 678 >seq672 Length=1075 Score = 91.5 bits (100), Expect = 4e-14 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| ||||| || || ||||| || |||||||| ||||| ||||| ||||||||| Sbjct 958 TCAACAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 1017 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGT 5280 ||||| || || ||||| | | ||| |||||||| Sbjct 1018 CCAAGATTAGCGCGGTTGATAATATCAGCCCAAGT 1052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152644074847728