Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq3048 524 2e-144 seq838 336 7e-88 seq929 325 1e-84 seq2823 306 1e-78 seq2704 168 2e-37 seq672 82.4 2e-11 >seq3048 Length=155691 Score = 524 bits (580), Expect = 2e-144 Identities = 714/995 (72%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| ||| |||| ||| |||||||| || || || ||||| ||||||||||||||||| Sbjct 426 TCAACAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 485 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCA 25563 || | | || ||||| | ||| ||||||||||| | || | || | |||| Sbjct 486 CCAAGATTAGCGCGGTTGATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCA 545 Query 25564 ACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATA 25623 || || || |||||||| ||||| || || | || |||||||||||| || || | | Sbjct 546 ACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAA 605 Query 25624 GCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTA 25683 ||||| | ||| || | || ||||||||||| | |||||| |||||| ||| | Sbjct 606 GCGGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAA 665 Query 25684 TTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG 25743 || || || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 666 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 725 Query 25744 TTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTT 25803 ||||| || ||||| ||||| |||||| | || || | || ||||||| | || Sbjct 726 TTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 785 Query 25804 GTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCA 25863 ||||| | || | || || || | | || ||||||||| ||||| | || Sbjct 786 GTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCG 845 Query 25864 CCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 25923 || ||||| || || ||||| ||||| || || || ||||||||||| ||||| || || Sbjct 846 CCAAATACACCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCT 905 Query 25924 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 25983 || || |||| ||| || |||||||| || || || || ||||||||||| ||||| || Sbjct 906 TGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAG 965 Query 25984 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 26043 || ||||| |||| ||||||| ||||| |||||| || ||||||||||| |||||| Sbjct 966 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAA 1025 Query 26044 TAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 26103 || || ||| ||||| || | ||| || || | ||||||||||||| | || ||| Sbjct 1026 TATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCC 1085 Query 26104 A---AGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCG 26160 | || ||||| | || | | ||||| | ||||| || | ||| || |||||| Sbjct 1086 ATATAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCACCG 1142 Query 26161 TTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATT 26220 || || ||||| || || | | || |||||||| |||||||| ||||| | ||| || Sbjct 1143 TTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATA 1202 Query 26221 GCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCT 26280 || ||| | |||| || || || || || || |||||||| || ||||| | ||| Sbjct 1203 GCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCA 1262 Query 26281 GAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAA 26340 || ||||| |||||||||||||| ||||| || ||||| ||||||| || ||||| | | Sbjct 1263 GAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATA 1322 Query 26341 AATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAG 26400 ||| | | ||| || || | | ||||||||| | || |||||||| || | || Sbjct 1323 AATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAA 1382 Query 26401 AGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 || ||||| | || || || | ||| | ||| || Sbjct 1383 AGACGGTTTTCGGTGCTGGTTATCCAATTACAAAA 1417 >seq838 Length=1002 Score = 336 bits (372), Expect = 7e-88 Identities = 438/603 (73%), Gaps = 7/603 (1%) Strand=Plus/Plus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || ||||||||| ||||| | || || ||||| || || ||||| ||||| || || Sbjct 19 CCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACACCTAGCATGTGAAAT 78 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 || ||||||||||| ||||| || || || || |||| ||| || |||||||| || || Sbjct 79 GGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAGTACCAGAG 138 Query 25957 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 26016 || || ||||||||||| ||||| || || ||||| |||| ||||||| ||||| ||| Sbjct 139 ATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACA 198 Query 26017 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGT 26076 ||| || ||||||||||| |||||||| || ||| ||||| || | ||| || || Sbjct 199 GCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGA 258 Query 26077 CTATAACTAAGTTCCCATTGTCGTCCCA---AGTAAGCTGAGATGCCGATGAGAAAGTGG 26133 | ||||||||||||| | || |||| || ||||| | || | | ||||| Sbjct 259 CGGAAACTAAGTTCCCACTCACGACCCATATAGCAAGCT---ACACCAAGTAAGAAGTGT 315 Query 26134 AACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCC 26193 | ||||| || | ||| || |||||||| || ||||| || || | | || |||||| Sbjct 316 AGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCC 375 Query 26194 CAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATG 26253 || |||||||| ||||| | ||| || || ||| | |||| || || || || || Sbjct 376 CATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATA 435 Query 26254 ATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCT-CACGAATACCATCTATATCCAC 26312 || |||||||| || ||||| | ||| || ||||| | ||||||||||||| ||||| || Sbjct 436 ATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTACACGAATACCATCAATATCTAC 495 Query 26313 GGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGAT 26372 ||||| ||||||| || ||||| | |||| | | ||| || || | | |||||| Sbjct 496 CGGAGGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGAT 555 Query 26373 CATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACA 26432 ||| | || |||||||| || | || || ||||| | || || || | ||| | ||| Sbjct 556 CATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAATTACA 615 Query 26433 TAA 26435 || Sbjct 616 AAA 618 >seq929 Length=1222 Score = 325 bits (360), Expect = 1e-84 Identities = 421/579 (73%), Gaps = 7/579 (1%) Strand=Plus/Minus Query 25861 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCT 25920 || || ||||| || || ||||| ||||| || || || ||||||||||| ||||| || Sbjct 1212 CCGCCAAATACACCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 1153 Query 25921 GCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAG 25980 || || || |||| ||| || |||||||| || || || || ||||||||||| ||||| Sbjct 1152 GCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAA 1093 Query 25981 AAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCT 26040 || || ||||| |||| ||||||| ||||| |||||| || ||||||||||| ||| Sbjct 1092 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 1033 Query 26041 GAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGT 26100 ||||| || ||| ||||| || | ||| || || | ||||||||||||| | || Sbjct 1032 GAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGA 973 Query 26101 CCCA---AGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCA 26157 |||| || ||||| | || | | ||||| | ||||| || | ||| || ||| Sbjct 972 CCCATATAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCA 916 Query 26158 CCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCG 26217 ||||| || ||||| || || | | || |||||||| |||||||| ||||| | ||| Sbjct 915 CCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCT 856 Query 26218 ATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCT 26277 || || ||| | |||| || || || || || || |||||||| || ||||| | | Sbjct 855 ATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGAT 796 Query 26278 CCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGC-AAT 26336 || || ||||| |||||||||||||| ||||| || ||||| ||||||| || || ||| Sbjct 795 CCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCTAAT 736 Query 26337 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCAC 26396 | |||| | | ||| || || | | ||||||||| | || |||||||| || | Sbjct 735 AATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAAT 676 Query 26397 ATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 || || ||||| | || || || | ||| | ||| || Sbjct 675 GTAAAGACGGTTTTCGGTGCTGGTTATCCAATTACAAAA 637 >seq2823 Length=1025 Score = 306 bits (338), Expect = 1e-78 Identities = 407/563 (72%), Gaps = 2/563 (0%) Strand=Plus/Minus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| ||| |||| ||| |||||||| || || || ||||| ||||||||||||||||| Sbjct 563 TCAACAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 504 Query 25504 CCTA-AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATC 25562 || | | | | | ||||| | ||| ||||||||||| | || | || | ||| Sbjct 503 CCAAGATTAGTCGCGGTTGATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATC 444 Query 25563 AACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCAT 25622 ||| || || |||||||| ||||| || || | || |||||||||||| || || | Sbjct 443 AACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAA 384 Query 25623 AGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCT 25682 |||||| | ||| || | || ||||||||||| | |||||| |||||| ||| Sbjct 383 AGCGGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGA 324 Query 25683 ATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 25742 ||| || || |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 323 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGAT 264 Query 25743 GTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGT 25802 ||||| || ||||| ||||| |||||| | || || | || ||||||| | || Sbjct 263 ATTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 204 Query 25803 TGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCC 25862 ||||| | || | || || || | | || ||||||||| ||||| | || Sbjct 203 GGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACC 144 Query 25863 ACCGAATACCCCTGCAACACCGAGCATAT-GGAACGGATGCATAAGGATATTGTGTTCTG 25921 || ||||| || || ||||| ||||| | | || || ||||||||||| ||||| || | Sbjct 143 GCCAAATACACCAGCCACACCTAGCATGTAGAAATGGGTGCATAAGGATGTTGTGCTCAG 84 Query 25922 CCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGA 25981 | || || |||| ||| || |||||||| || || || || ||||||||||| ||||| | Sbjct 83 CTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAA 24 Query 25982 AACTCCCTTGTCCAAAAGGGTAG 26004 | || ||||| |||| |||||| Sbjct 23 AGCTTCCTTGACCAATTGGGTAG 1 >seq2704 Length=1012 Score = 168 bits (186), Expect = 2e-37 Identities = 222/308 (72%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 26128 AAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCA 26187 ||||| | ||||| || | ||| || |||||||| || ||||| || || | | || Sbjct 985 AAGTGTAGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCC 926 Query 26188 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 26247 |||||||| |||||||| ||||| | ||| || || ||| | |||| || || || Sbjct 925 GCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCG 866 Query 26248 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 26307 || || || |||||||| || ||||| | ||| || ||||| |||||||||||||| ||| Sbjct 865 GAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATA 806 Query 26308 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCA 26367 || || ||||| ||||||| || ||||| | |||| | | ||| || || | | | Sbjct 805 TCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGCGGTCAATAAAGTA 746 Query 26368 GGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAG 26427 |||||||| | || |||||||| || | || || ||||| | || || || | ||| Sbjct 745 GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAA 686 Query 26428 TCACATAA 26435 | ||| || Sbjct 685 TTACAAAA 678 >seq672 Length=1075 Score = 82.4 bits (90), Expect = 2e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| ||| |||| ||| |||||||| || || || ||||| ||||||||||||||||| Sbjct 958 TCAACAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 1017 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGT 25538 || | | || ||||| | ||| ||||||||||| Sbjct 1018 CCAAGATTAGCGCGGTTGATAATATCAGCCCAAGT 1052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151988098591648