Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3 118 8e-22 seq6 107 1e-18 seq1 96.9 3e-15 seq2 95.1 9e-15 seq5 89.7 4e-13 >seq3 Length=27879571 Score = 118 bits (130), Expect = 8e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||||||||||||||| | |||| | || | || || | ||||||||| ||||| Sbjct 13775331 CTCCTTTTGAATATTGTAATCTGCTAGAGTCCGGCCATCTTCAAGCTGCTTACCAGCAAA 13775272 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||| || | ||| || |||| |||| |||||||||||| ||||||| ||| ||| Sbjct 13775271 TATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCTTTCACATT 13775212 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||| ||||||| || || || ||||| || | || || || Sbjct 13775211 ATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAGTGAGGGTCTTCAC 13775152 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 13775151 AAAGATCTGCATC 13775139 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || ||| ||||||||| ||||||||||| | || | || Sbjct 13774673 AGACGGAGCACCAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCTGCGAGCGTACGG 13774614 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| || |||||||| || || | ||| ||||| | ||| | ||||||| Sbjct 13774613 CCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGGATGCCCTCC 13774554 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || ||| | | | | || || ||| ||||||| || Sbjct 13774553 TTGTCCTGAATCTTTGCCTTGACATTATCGATTGTGTCAGAGCTCTCAACCTCCAATGTG 13774494 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| || ||||| |||||||| Sbjct 13774493 ATGGTCTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 13774456 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || |||||| | || || || ||||||||| ||||| ||||| | Sbjct 9477438 CCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAATCTGCA 9477497 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||||| | || |||||||||||||| ||||| ||||||| ||| ||||| | || Sbjct 9477498 AGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCTGGAGGG 9477557 Query 48660 ACGCCCTCCTTGTC 48673 | ||| |||||||| Sbjct 9477558 ATGCCTTCCTTGTC 9477571 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || ||| || || || |||||||||| || |||| Sbjct 183770 AGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCAAGGGTTCGG 183711 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| ||||| ||||| || |||| ||| | |||||| Sbjct 183710 CCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCC 183651 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | || || | ||||||||| | || Sbjct 183650 TTGTCCTGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTG 183591 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || || | ||||| || ||||| |||||| Sbjct 183590 ATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCATC 183552 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || || || ||||||||||| || | ||| | ||| Sbjct 13656897 AGACGCAACACCAAGTGAAGAGTTGATTCCTTCTGAATATTGTAGTCCGCAAGAGTGCGA 13656838 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| || || ||||| || || | ||| || || | |||| |||||| Sbjct 13656837 CCATCCTCTAGCTGTTTCCCTGCAAAAATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCT 13656778 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || ||| | | | | ||||| || ||||||| || Sbjct 13656777 TTGTCCTGAATCTTTGCCTTGACATTATCAATTGTATCTGAACTTTCAACCTCCAAGGTG 13656718 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | || || ||||| || ||||| Sbjct 13656717 ATTGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 13656680 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||| || || ||| |||||||||||| ||||| |||| || |||| |||| || Sbjct 13774437 CACCAGGTGGAGGGTGGACTCTTTTTGAATGTTGTAGTCAGCAAGTGTTCGGCCGTCCTC 13774378 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | |||||| || ||||| ||||| | || || || | ||| | ||||||||||| Sbjct 13774377 GAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTG 13774318 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 |||||| || ||| | | || || || || ||||| | || || || || Sbjct 13774317 GATCTTTGCCTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTCTT 13774258 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || | ||||| ||||| ||||||||| Sbjct 13774257 GCCTGTGAGGGTTTTCACAAAGATCTGCATC 13774227 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||||||| ||||| || | ||| ||| |||| |||||||| ||||| ||||| Sbjct 13774874 TCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAG 13774815 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||| | ||||| ||||||||||| |||||| ||| ||| Sbjct 13774814 ATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTTGCTTTAACATTG 13774755 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || |||||||||| || || || || || || | || || ||| Sbjct 13774754 TCAATTGTATCAGAGCTTTCCACCTCCAATGTGATTGTCTTCCCAGTAAGGGTCTTCACA 13774695 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 13774694 AAGATTTGCAT 13774684 >seq6 Length=38222195 Score = 107 bits (118), Expect = 1e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 ||| ||||| | || || | ||||| || || ||| ||| || ||||| |||||||| Sbjct 34519590 GTCACCGCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATC 34519649 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG- 48654 || || | ||| |||| || | |||||| |||||||| |||| | || || |||| Sbjct 34519650 AGCCAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCCGG 34519709 Query 48655 TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCT 48714 ||||| | || ||||| || ||||| ||| ||| | | | | || || || Sbjct 34519710 TGGGATC-CCTTCCTTATCCTGGATCTTGGCTTTGACATTATCAATGGTATCCGAGCTCT 34519768 Query 48715 CCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 | ||||||| || || || || || |||||||| || ||||||||||||||| Sbjct 34519769 CAACCTCCAAAGTGATGGTCTTGCCTGTCAAAGTCTTCACAAAAATCTGCATC 34519821 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| || || ||||||||||||| || | ||| | || || Sbjct 34537286 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTACGACCATCCTCG 34537345 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| |||| | ||| || |||| || | || ||||| || Sbjct 34537346 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGG 34537405 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| ||| | | | | ||||| ||||||||||| || || || ||| Sbjct 34537406 ATCTTGGCTTTGACATTATCGATGGTATCTGAACTCTCCACCTCCAAAGTGATGGTCTTT 34537465 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || |||||||| || ||||| ||||||||| Sbjct 34537466 CCTGTCAAAGTCTTCACAAAGATCTGCATC 34537495 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| ||| || || ||||||||||| | | | |||| Sbjct 34520059 AGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCGGCCAAAGTTCGG 34520118 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||||||||| || |||| | ||| || |||| ||||| |||||| Sbjct 34520119 CCATCCTCCAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATTCCCTCC 34520178 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || ||| ||||| | || Sbjct 34520179 TTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTATCAGAGCTCTCGACCTCGAGAGTG 34520238 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || | ||||| || || |||||||| Sbjct 34520239 ATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 34520276 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || | |||||| || || || ||| || || ||||||||||| | Sbjct 34537724 CCACCCCTCAATCGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGCC 34537783 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | | |||| |||||||||||||||||||| |||| || ||| ||||||| |||| Sbjct 34537784 AGGGTCCTGCCGTCCTCCAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCCGGGGGA 34537843 Query 48660 ACGCCCTCCTTGTC 48673 | |||||||| || Sbjct 34537844 ATTCCCTCCTTATC 34537857 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| | |||||| || || ||| ||| || || ||||||||||| | ||| | | Sbjct 34537505 AGCCTGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATATTGTAATCCGCAAGAGTCCTG 34537564 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCC-GTGGGAACGCCCTC 48667 | || ||||| ||||| || || || |||| | ||| |||||| |||||| | || || Sbjct 34537565 CCATCCTCCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGTGGGATC-CCTTC 34537623 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||| || ||||| || || | | | | || || ||| ||||||| || Sbjct 34537624 CTTATCCTGGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCAACCTCCAGGGT 34537683 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || || |||||||| || |||||||||||||| Sbjct 34537684 AATGGTCTTCCCTGTCAAAGTCTTCACAAAAATCTGCAT 34537722 >seq1 Length=22681039 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||| || || || ||| || || || ||||| || | Sbjct 22555131 CGCCACCGCGGAGGCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 22555190 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 ||| | || |||| || | ||| || ||||| || || || ||||| || |||| | Sbjct 22555191 CGAGAGTCCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCG 22555250 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || ||| | | | | || || | ||||| Sbjct 22555251 GGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTATCGATGGTGTCGGAGGACTCCA 22555310 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| ||||| || ||||| | ||||| || || ||||||||| || Sbjct 22555311 CCTCCAACGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTG 22555363 >seq2 Length=33308843 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||||||||| || ||||| |||| || | || |||| || Sbjct 6939306 ACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTATTCAGCGAGTGTCCGCCCGTCCTCA 6939365 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| ||||| | ||| | |||| ||||| ||||||||||| Sbjct 6939366 AGCTGCTTGCCAGCAAAGATCAGCCTTTGTCGGTCCGGGGGAATTCCCTCCTTGTCTTGG 6939425 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||| ||| | | || || || || ||||| | || || || || Sbjct 6939426 ATCTTTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTG 6939485 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || | ||||| ||||| ||||||||| Sbjct 6939486 CCTGTGAGGGTTTTCACAAAGATCTGCATC 6939515 >seq5 Length=29328693 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||| ||||| | | | | ||| | || ||||||||||| ||||| || Sbjct 19804623 CTCCTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAA 19804564 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | || ||||||| || | |||||||| || || ||| ||| ||| Sbjct 19804563 GATCAACCTTTGCTGATCCGGCGGGATACCCTCCTTATCTTGAACCTTGGCTTTGACATT 19804504 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||| || || || || || |||||||| || || Sbjct 19804503 GTCAATGGTATCGGAGCTCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAAGTCTTCAC 19804444 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 19804443 AAAAATCTGCAT 19804432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380923449120504