Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq3048 563 1e-155 seq2823 370 1e-97 seq838 331 1e-85 seq929 302 5e-77 seq2704 143 3e-29 seq672 93.3 5e-14 >seq3048 Length=155691 Score = 563 bits (624), Expect = 1e-155 Identities = 700/956 (73%), Gaps = 12/956 (1%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| || | | ||| | || || || ||| Sbjct 1375 GGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATT 1316 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| |||||||| || ||||| |||||||| | ||||||||| | || || Sbjct 1315 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1256 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 | || || || ||||| || || || ||||| | | |||| ||| ||||| ||| Sbjct 1255 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 1196 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | ||||| || || || |||||||| || || ||||||| ||||| || || ||||| Sbjct 1195 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 1136 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGT 162837 |||| | || | || | |||||| | | || | ||| | || | |||||| Sbjct 1135 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTATATGGGTCGT 1079 Query 162838 CAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 162897 ||||||||||| || ||| | |||||||| |||||||| ||||||||| || || Sbjct 1078 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCT 1019 Query 162898 CCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 162957 || || | || || ||||| |||||| |||| || | |||||||| || ||| Sbjct 1018 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCT 959 Query 162958 GACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAG 163017 |||| |||||||| || || ||||||||||| |||| |||| | || |||||||| ||| Sbjct 958 GACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAG 899 Query 163018 CACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCA 163077 ||||||||||| |||||||| || || ||| | || || || |||||||| || ||||| Sbjct 898 CACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCC 839 Query 163078 CTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAG 163137 || || ||||||||||| |||||| | || || ||| | | ||||| ||||| || || Sbjct 838 CTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAA 779 Query 163138 CAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTT 163197 | || || || | ||||| | ||||| ||||| ||||| || || || || || Sbjct 778 AATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTA 719 Query 163198 GCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGT 163257 || |||||||| || ||||| || ||||||||||| ||||| ||||||||| || ||| Sbjct 718 GCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGT 659 Query 163258 TCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGT 163317 || | ||||||||| | ||||| | ||||| || | ||||||||||| || | ||| Sbjct 658 TCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGT 599 Query 163318 GTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---C 163374 | |||||||| |||||| | || ||||| || ||||| ||||| || ||||| Sbjct 598 ATCAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGT 539 Query 163375 GCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATG 163434 |||| || || ||| ||||||||| ||||| | ||| | || ||||||||| Sbjct 538 CAAGGTCGT---GTAATTAATACTTGGGCTGATATTATCAACCGCGCTAATCTTGGTATG 482 Query 163435 GAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 ||||||||||| || ||||||||||| || ||||| || ||||| ||||||| ||| Sbjct 481 GAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGCTGTTGA 426 >seq2823 Length=1025 Score = 370 bits (410), Expect = 1e-97 Identities = 418/556 (75%), Gaps = 8/556 (1%) Strand=Plus/Plus Query 162940 GGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATG 162999 |||||||| || ||||||| |||||||| || || ||||||||||| |||| |||| Sbjct 11 GGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATG 70 Query 163000 TTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCC-ATATGATTGGAGTCGC 163058 | || |||||||| |||||||||||||| |||||||| || | | ||| | || || || Sbjct 71 ATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCTACATGCTAGGTGTGGC 130 Query 163059 AGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCT 163118 |||||||| || ||||| || || ||||||||||| |||||| | || || ||| | | Sbjct 131 TGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTT 190 Query 163119 TATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGA 163178 ||||| ||||| || || | || || || | ||||| | ||||| ||||| || Sbjct 191 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGA 250 Query 163179 AGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGC 163238 ||| || || || || || || |||||||| || ||||| || ||||||||||| ||||| Sbjct 251 AGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 310 Query 163239 ATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCAT 163298 ||||||||| || ||||| | ||||||||| | ||||| | ||||| || | || Sbjct 311 TAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTAT 370 Query 163299 CTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAA 163358 ||||||||| || | ||| | |||||||| |||||| | || ||||| || ||||| Sbjct 371 CTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAA 430 Query 163359 CCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAA 163415 ||||| || ||||| |||| || || ||| ||||||||| ||||| | || Sbjct 431 TCAATCTGTAGTTGATAGTCAAGGTCGT---GTAATTAATACTTGGGCTGATATTATCAA 487 Query 163416 CAGAG-CAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTG 163474 | | | | |||||||||||||||||||| || ||||||||||| || ||||| || | Sbjct 488 CCGCGACTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAG 547 Query 163475 ACCTTGCTGCTGCTGA 163490 |||| ||||||| ||| Sbjct 548 ACCTAGCTGCTGTTGA 563 >seq838 Length=1002 Score = 331 bits (366), Expect = 1e-85 Identities = 421/577 (73%), Gaps = 7/577 (1%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| || | | ||| | || || || ||| Sbjct 576 GGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATT 517 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAG-AACCTGTTGCAGGTTC 162659 || |||||||| |||||||| || ||||| |||||||| | | |||||||| | || || Sbjct 516 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGTAACCTGTTTCTGGATC 457 Query 162660 ACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGG 162719 | || || || ||||| || || || ||||| | | |||| ||| ||||| || Sbjct 456 TTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGG 397 Query 162720 TCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGG 162779 | | ||||| || || || |||||||| || || ||||||| ||||| || || ||||| Sbjct 396 TTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGG 337 Query 162780 ACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCG 162836 |||| | || | || | |||||| | | || | ||| | || | ||||| Sbjct 336 CCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTATATGGGTCG 280 Query 162837 TCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGC 162896 | ||||||||||| || ||| | |||||||| |||||||| ||||||||| || || Sbjct 279 TGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGC 220 Query 162897 ACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTC 162956 || || | || || ||||| |||||| |||| || | |||||||| || || Sbjct 219 TCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTC 160 Query 162957 TGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGA 163016 ||||| |||||||| || || ||||||||||| |||| |||| | || |||||||| || Sbjct 159 TGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGA 100 Query 163017 GCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTC 163076 |||||||||||| |||||||| || || ||| | || || || |||||||| || ||||| Sbjct 99 GCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTC 40 Query 163077 ACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCT 163113 || || ||||||||||| |||||| | || || ||| Sbjct 39 CCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCT 3 >seq929 Length=1222 Score = 302 bits (334), Expect = 5e-77 Identities = 396/546 (73%), Gaps = 7/546 (1%) Strand=Plus/Plus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| || | | ||| | || || || ||| Sbjct 679 GGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATT 738 Query 162601 -GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTC 162659 || |||||||| |||||||| || ||||| |||||||| | ||||||||| | || || Sbjct 739 AGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATC 798 Query 162660 ACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGG 162719 | || || || ||||| || || || ||||| | | |||| ||| ||||| || Sbjct 799 TTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGG 858 Query 162720 TCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGG 162779 | | ||||| || || || |||||||| || || ||||||| ||||| || || ||||| Sbjct 859 TTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGG 918 Query 162780 ACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCG 162836 |||| | || | || | |||||| | | || | ||| | || | ||||| Sbjct 919 CCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTATATGGGTCG 975 Query 162837 TCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGC 162896 | ||||||||||| || ||| | |||||||| |||||||| ||||||||| || || Sbjct 976 TGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGC 1035 Query 162897 ACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTC 162956 || || | || || ||||| |||||| |||| || | |||||||| || || Sbjct 1036 TCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTC 1095 Query 162957 TGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGA 163016 ||||| |||||||| || || ||||||||||| |||| |||| | || |||||||| || Sbjct 1096 TGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGA 1155 Query 163017 GCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTC 163076 |||||||||||| |||||||| || || ||| | || || || |||||||| || ||||| Sbjct 1156 GCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTC 1215 Query 163077 ACTCTT 163082 || || Sbjct 1216 CCTATT 1221 >seq2704 Length=1012 Score = 143 bits (158), Expect = 3e-29 Identities = 178/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| || | | ||| | || || || ||| Sbjct 720 GGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATT 779 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| |||||||| || ||||| |||||||| | ||||||||| | || || Sbjct 780 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 839 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 | || || || ||||| || || || ||||| | | |||| ||| ||||| ||| Sbjct 840 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 899 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | ||||| || || || |||||||| || || ||||||| ||||| || || ||||| Sbjct 900 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 959 Query 162781 CCTT 162784 |||| Sbjct 960 CCTT 963 >seq672 Length=1075 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 163387 GTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCAC 163446 || ||| ||||||||| ||||| | ||| | || |||||||||||||||||||| Sbjct 1061 GTAATTAATACTTGGGCTGATATTATCAACCGCGCTAATCTTGGTATGGAAGTTATGCAT 1002 Query 163447 GAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGA 163490 || ||||||||||| || ||||| || ||||| ||||||| ||| Sbjct 1001 GAACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGCTGTTGA 958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553063727469120