Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6 192 1e-43 >seq6 Length=38222195 Score = 192 bits (212), Expect = 1e-43 Identities = 571/868 (66%), Gaps = 32/868 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCA-ACGAGATGTTCT 47897 |||||| ||||| ||||| ||||||||||| || |||||||||| | || | || || Sbjct 28138736 CTGGTACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTA-ATCAGCT 28138794 Query 47898 CCATGAAGAGGAAGGGGTTGGGTGTGTTATACA----CCCGTGTCAGGCCCATCTGTTCC 47953 |||| | || ||||| | | ||||| ||| | || ||| | || Sbjct 28138795 CCATCCAATCAAATGGGTTCTGCACATCATACAGTTTCCCATATC----CCAACGCACCC 28138850 Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTA-T 48012 ||||| ||| |||||| |||||||||| | ||| || |||||| || | | Sbjct 28138851 AGCAGCCTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACT 28138910 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 ||| ||||| || || | || |||||||||||||| | || || | || ||| Sbjct 28138911 AAGGCGCACGGT-AACGCGTCGCAGACGAACTCCTTCTCTATGTCAACCGCGTTCCGCAC 28138969 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 || ||| ||||| ||| | | | || | || ||| | || ||||| | ||| Sbjct 28138970 GATTGACTTCACGCGCTCCTCGGTGAGCTTCATCCGGAGGAG---GGAGTAGAGAAGGCA 28139026 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 || ||||| | ||| | |||||| || || ||| | | |||| |||||| ||||| Sbjct 28139027 CGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACC 28139086 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | ||| | || ||| ||||| || || || ||| || ||||||||||| Sbjct 28139087 CGGCATCAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGAT 28139146 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 || ||||| ||||| || || || ||| |||||| || ||| ||| Sbjct 28139147 CCCTTCCACGCAGGCGAAGGCCACGATCCGCTCCGCGAAAGTTTCGGAGCCGTC---GAT 28139203 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||| || ||||| | ||||| ||| || ||| || || || || | ||||||||| Sbjct 28139204 CCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGGAA 28139263 Query 48373 GA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACAT 48429 || | ||| ||| | | ||| | ||||| ||| || |||||| Sbjct 28139264 GAGACGGGACTT---CTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACAT 28139320 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||| ||||| | ||||| || ||||||||||| ||||||||||| | ||||| | || Sbjct 28139321 CTCGGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGAC 28139380 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||| || || | ||| || ||| || |||||||| || || || || || || | Sbjct 28139381 CTGGACCTCCTTCATGAACCT-TCCGGCAAGATTCTCGAGTACGATGCCGTCGGAGGCGG 28139439 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCA-- 48606 | |||||||| ||||| || | | ||| || |||| | |||| || | | ||| Sbjct 28139440 CGAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGT 28139499 Query 48607 -GCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || ||| ||||| | || || || || || | |||||||| ||||| || | Sbjct 28139500 GGCGCTG---GTCTTGATCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCT 28139556 Query 48666 TTTTGTACATGCCCCATATGTCCGGATA 48693 | |||||||| |||| || ||||| || Sbjct 28139557 TCTTGTACATCTCCCAGATCTCCGGGTA 28139584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931497308600320