Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6 143 5e-29 >seq6 Length=38222195 Score = 143 bits (158), Expect = 5e-29 Identities = 379/570 (66%), Gaps = 9/570 (2%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || |||||||||||||||||||| | || |||||||||||| ||| | ||| Sbjct 28139578 GAGATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGGAGGTCGAT 28139519 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || | | ||| | | |||| | | ||| || | |||| |||| || ||| Sbjct 28139518 CTCGATCAAGACCAGCGCCACTGGGAAACCCTAACCCCCGGCGAGAAGCACTTCATCACT 28139459 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || ||||||||| || || Sbjct 28139458 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTACTCGAGAATCTTGCCGGAAGG 28139399 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCAT 25712 |||| | ||| || ||| | ||||| | ||| |||||||| |||||||| || || Sbjct 28139398 TTCATGAAGGAGGTCCAGGTCTCGGAGG-CGCGTGCCTTCTACGGCTTCCAGATCGCGAT 28139340 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| |||| | || || ||| ||||| | |||| | Sbjct 28139339 TGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACATCAAAGACTCGGA 28139280 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 ||||| || || || | ||| |||| ||| || || || || ||||||| Sbjct 28139279 CGAGAAGTCCCGTCTCTTCCGGGCCGTCGACACCATCCCTTGCGTCGCGAAAAAGGCGCA 28139220 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 ||||||| |||| |||||| || || || || || | |||||| | || ||||| Sbjct 28139219 GTGGGCCCTGAAATGGATCGACGGC---TCCGAAACTTTCGCGGAGCGGATCGTGGCCTT 28139163 Query 25893 TG-CTGCTGTGGAGGGCATCTTTTTC-AGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAG 25950 | |||| ||||| || ||||| ||| | | | | ||| || || || ||||| || Sbjct 28139162 CGCCTGC-GTGGAAGGGATCTTCTTCTCGGGAAGCTTCTGC-GCGATATTTTGGCTAAAA 28139105 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || ||| ||||| || ||| ||| || |||||| | ||| | || || || Sbjct 28139104 AAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCGCGAGATGAAGGC 28139045 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||||| | || || || ||||| |||||| Sbjct 28139044 CTCCACTGCGACTTCGCGTGCCTTCTCTAC 28139015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928809411013120