Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq3048 87.8 3e-12 seq924 87.8 3e-12 seq903 87.8 3e-12 seq678 87.8 3e-12 >seq3048 Length=155691 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 169725 TTAGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTC 169784 || ||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||| Sbjct 30926 TTGGGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTC 30868 Query 169785 GAGCCCCGTCAGTCC 169799 ||||||||||||||| Sbjct 30867 GAGCCCCGTCAGTCC 30853 >seq924 Length=1001 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 169725 TTAGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTC 169784 || ||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||| Sbjct 937 TTGGGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTC 879 Query 169785 GAGCCCCGTCAGTCC 169799 ||||||||||||||| Sbjct 878 GAGCCCCGTCAGTCC 864 >seq903 Length=1035 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 169725 TTAGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTC 169784 || ||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||| Sbjct 229 TTGGGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTC 171 Query 169785 GAGCCCCGTCAGTCC 169799 ||||||||||||||| Sbjct 170 GAGCCCCGTCAGTCC 156 >seq678 Length=1166 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 169725 TTAGGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTC 169784 || ||||||||| ||| |||||| |||| ||||||||||| |||||| | |||||||| Sbjct 1074 TTGGGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTC 1132 Query 169785 GAGCCCCGTCAGTCC 169799 ||||||||||||||| Sbjct 1133 GAGCCCCGTCAGTCC 1147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777602372220800