Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq3048 531 2e-146 seq838 351 3e-92 seq929 340 5e-89 seq2823 297 6e-76 seq2704 181 3e-41 seq672 82.4 2e-11 >seq3048 Length=155691 Score = 531 bits (588), Expect = 2e-146 Identities = 715/989 (72%), Gaps = 10/989 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| ||||| |||||||||||||| || ||||||||||| | ||||| || Sbjct 434 AGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATT 493 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 494 AGCGCGGTTGATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACA-- 551 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||| ||||| || || ||||| | || |||||||||||| ||| || | || ||| Sbjct 552 -GATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGT 610 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || ||||||||||| |||||||| |||| | | |||||| Sbjct 611 GAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAATTGTT 670 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 || |||||||| |||||||| | || ||||| || |||||||| || || |||||||| Sbjct 671 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 730 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| || ||| | || || | || ||| ||| || || ||||| Sbjct 731 GGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 790 Query 18191 TCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 || || | || || || | | || ||||||||| ||||| | || || || Sbjct 791 CCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAA 850 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| || || ||||| ||||| || || || ||||||||||| ||||| || |||||||| Sbjct 851 TACACCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAA 910 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 ||| | |||||| ||||||||||| || || ||||||||||| ||||| || || || Sbjct 911 TACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCC 970 Query 18371 TTGTCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 ||| |||| || || | | ||||| || | || | |||||||| || || || ||||| Sbjct 971 TTGACCAATTGGGTAGATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAATAT 1028 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 |||||| |||||| ||||||||||| || | ||||||||||||| | || ||||| Sbjct 1029 GCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATA 1088 Query 18489 TAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 18548 || || | || | | ||||| | ||||| || | ||| || || ||||| ||| Sbjct 1089 TAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCACCGTTGTAT 1148 Query 18549 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 18608 ||||| || || | | || |||||||| |||||||| ||||| | ||| || || | Sbjct 1149 AACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCA 1208 Query 18609 GATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACA 18668 || | |||| || || || || || || |||||||| || ||||| | ||| || ||| Sbjct 1209 GAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACA 1268 Query 18669 GGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCT 18728 || |||||||||||||| || || || ||||| ||||||| || ||||| | |||| | Sbjct 1269 GGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACA 1328 Query 18729 GTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGG 18788 | || |||||| || | | ||||||||| | || |||||||| || | ||| || ||| Sbjct 1329 GAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGG 1388 Query 18789 TTGTTTGTACTCGTAACCCAGTCACATAA 18817 || | || || || | ||| | ||| || Sbjct 1389 TTTTCGGTGCTGGTTATCCAATTACAAAA 1417 >seq838 Length=1002 Score = 351 bits (388), Expect = 3e-92 Identities = 443/602 (74%), Gaps = 5/602 (1%) Strand=Plus/Plus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || ||||||||| ||||| | || || ||||| || || ||||| ||||| || || Sbjct 19 CCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACACCTAGCATGTGAAAT 78 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338 || ||||||||||| ||||| || ||||||||||| | |||||| ||||||||||| Sbjct 79 GGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAGTACCAGAG 138 Query 18339 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATAC 18397 || || ||||||||||| ||||| || || ||||| |||| || || | | ||||| || Sbjct 139 ATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAA-AC 197 Query 18398 TG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTA 18456 | || || ||||||| || || || ||||| |||||| |||||| ||||||||||| | Sbjct 198 AGCAGTAG-CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCA 256 Query 18457 GTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGA 18516 | | ||||||||||||| | || ||||| || || | || | | ||||| | Sbjct 257 GACGGAAACTAAGTTCCCACTCACGACCCATATAGCAAGCTACACCAAGTAAGAAGTGTA 316 Query 18517 ACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCC 18576 ||||| || | ||| || || ||||| |||||||| || || | | || ||||||| Sbjct 317 GAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCC 376 Query 18577 AGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGA 18636 | |||||||| ||||| | ||| || || ||| | |||| || || || || || | Sbjct 377 ATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAA 436 Query 18637 TGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCT-CACGAATACCATCTATGTCAACG 18695 | |||||||| || ||||| | ||| || ||||| | ||||||||||||| || || || Sbjct 437 TATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTACACGAATACCATCAATATCTACC 496 Query 18696 GGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATC 18755 ||||| ||||||| || ||||| | |||| | | || |||||| || | | ||||||| Sbjct 497 GGAGGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATC 556 Query 18756 ATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACAT 18815 || | || |||||||| || | ||| || ||||| | || || || | ||| | ||| Sbjct 557 ATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAATTACAA 616 Query 18816 AA 18817 || Sbjct 617 AA 618 >seq929 Length=1222 Score = 340 bits (376), Expect = 5e-89 Identities = 426/578 (74%), Gaps = 5/578 (1%) Strand=Plus/Minus Query 18243 CCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCG 18302 || || ||||| || || ||||| ||||| || || || ||||||||||| ||||| || Sbjct 1212 CCGCCAAATACACCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 1153 Query 18303 GCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAG 18362 ||||||||||| | |||||| ||||||||||| || || ||||||||||| ||||| Sbjct 1152 GCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAA 1093 Query 18363 AAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTG 18420 || || ||||| |||| || || | | ||||| || | || || ||||||| || || | Sbjct 1092 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAA-ACAGCAGTAG-CAGCTGCAACAGGAG 1035 Query 18421 CGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTC 18480 | ||||| |||||| |||||| ||||||||||| || | ||||||||||||| | | Sbjct 1034 CTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCAC 975 Query 18481 GTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTC 18540 | ||||| || || | || | | ||||| | ||||| || | ||| || || | Sbjct 974 GACCCATATAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCAC 915 Query 18541 CGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGA 18600 |||| |||||||| || || | | || |||||||| |||||||| ||||| | ||| | Sbjct 914 CGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTA 855 Query 18601 TTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTC 18660 | || ||| | |||| || || || || || || |||||||| || ||||| | || Sbjct 854 TAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATC 795 Query 18661 CTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGC-AATC 18719 | || ||||| |||||||||||||| || || || ||||| ||||||| || || ||| Sbjct 794 CAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCTAATA 735 Query 18720 AAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACG 18779 | |||| | | || |||||| || | | ||||||||| | || |||||||| || | | Sbjct 734 ATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATG 675 Query 18780 TAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 || || ||||| | || || || | ||| | ||| || Sbjct 674 TAAAGACGGTTTTCGGTGCTGGTTATCCAATTACAAAA 637 >seq2823 Length=1025 Score = 297 bits (328), Expect = 6e-76 Identities = 398/550 (72%), Gaps = 8/550 (1%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| ||||| |||||||||||||| || ||||||||||| | ||||| || Sbjct 555 AGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATT 496 Query 17894 AG-CTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAA 17949 || | | ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 495 AGTCGCGGTTGATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACA- 437 Query 17950 TGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGG 18009 ||||| ||||| || || ||||| | || |||||||||||| ||| || | || || Sbjct 436 --GATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGG 379 Query 18010 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGT 18069 | | ||| || | || ||||||||||| |||||||| |||| | | ||||| Sbjct 378 TGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAATTGT 319 Query 18070 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTAT 18129 | || |||||||| |||||||| | || ||||| || |||||||| || || ||||||| Sbjct 318 TGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 259 Query 18130 ACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTT 18189 | || ||||| ||||| || ||| | || || | || ||| ||| || || |||| Sbjct 258 AGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 199 Query 18190 CTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 18249 | || || | || || || | | || ||||||||| ||||| | || || | Sbjct 198 CCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAA 139 Query 18250 ATACCCCTGCAACACCGAGCATAT-GGAACGGATGCATAAGGATATTGTGTTCGGCTTGG 18308 |||| || || ||||| ||||| | | || || ||||||||||| ||||| || |||||| Sbjct 138 ATACACCAGCCACACCTAGCATGTAGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGG 79 Query 18309 AATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTC 18368 ||||| | |||||| ||||||||||| || || ||||||||||| ||||| || || Sbjct 78 AATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTT 19 Query 18369 CCTTGTCCAA 18378 ||||| |||| Sbjct 18 CCTTGACCAA 9 >seq2704 Length=1012 Score = 181 bits (200), Expect = 3e-41 Identities = 225/308 (73%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 18510 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 18569 ||||| | ||||| || | ||| || || ||||| |||||||| || || | | || Sbjct 985 AAGTGTAGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCC 926 Query 18570 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 18629 |||||||| |||||||| ||||| | ||| || || ||| | |||| || || || Sbjct 925 GCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCG 866 Query 18630 GATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATG 18689 || || || |||||||| || ||||| | ||| || ||||| |||||||||||||| || Sbjct 865 GAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATA 806 Query 18690 TCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCA 18749 || || ||||| ||||||| || ||||| | |||| | | || |||||| || | | | Sbjct 805 TCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGCGGTCAATAAAGTA 746 Query 18750 GGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAG 18809 |||||||| | || |||||||| || | ||| || ||||| | || || || | ||| Sbjct 745 GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAA 686 Query 18810 TCACATAA 18817 | ||| || Sbjct 685 TTACAAAA 678 >seq672 Length=1075 Score = 82.4 bits (90), Expect = 2e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| ||||| |||||||||||||| || ||||||||||| | ||||| || Sbjct 966 AGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATT 1025 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTA 17921 ||| | ||||| | |||||||| ||| Sbjct 1026 AGCGCGGTTGATAATATCAGCCCAAGTA 1053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151312923030512