Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq3048 468 1e-127 seq2823 293 7e-75 seq838 277 5e-70 seq929 273 6e-69 seq2704 107 6e-19 >seq3048 Length=155691 Score = 468 bits (518), Expect = 1e-127 Identities = 684/960 (71%), Gaps = 8/960 (1%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||| || || || || || |||||||| || || | ||||| || Sbjct 435 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 494 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 || ||||| | ||| |||||||| || || || || | || | | | | | | |||| Sbjct 495 GCGCGGTTGATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGAT 554 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTA--GACACGCCAAGCGCAGCAA 21648 || || || || |||||||| |||||||||||||| || || || ||||| | | Sbjct 555 TGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTG--A 612 Query 21649 ACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAA 21708 |||| |||||||| |||||||| ||||| | ||||| || | | ||| ||||| || | Sbjct 613 ACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAATTGTTGA 672 Query 21709 AGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAG 21768 | ||||||||||||||||| | || |||||||| || ||||| || || ||||| || | Sbjct 673 AACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAGG 732 Query 21769 TCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCAC 21828 | |||||||||||||| || ||||||| | || || | | ||| || || || | Sbjct 733 TTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCC 792 Query 21829 GAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATA 21888 || | || || |||| ||| ||||||||| ||| | || ||||||| Sbjct 793 TGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATA 852 Query 21889 CGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACA 21948 | || |||||||| ||||||||||| || |||||||| || ||||||||||| ||||| | Sbjct 853 CACCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATA 912 Query 21949 CCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCT 22008 | | |||| ||||||| || || || || || | |||||| | |||||||| || | Sbjct 913 CAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTT 972 Query 22009 GTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAA 22068 | |||| || || | | ||| |||||||| ||||| || |||||||| || || |||| Sbjct 973 GACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAA 1032 Query 22069 CAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAG 22128 || ||||| || | ||| || || || | |||||||||||||| || ||||| | || Sbjct 1033 CAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATAT-AG 1091 Query 22129 CAA-AGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGC 22187 ||| || |||| | |||||| | || | || | | || || |||||||| | | Sbjct 1092 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCACCGTTGTATAAC 1151 Query 22188 CATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTG 22247 |||||||||| | ||| |||||||| |||||||| ||||| | || || || | Sbjct 1152 CATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAA 1211 Query 22248 CTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGT 22307 | || | | ||| || || || || ||||| || || | | || |||| || ||| Sbjct 1212 GTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGT 1271 Query 22308 TCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTT 22367 || || || ||||| || || || || ||||| ||| || || |||||||| || Sbjct 1272 TCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGAA 1331 Query 22368 GTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 || |||| ||| | | | || ||||| | || || |||||||| | ||||||||||| Sbjct 1332 GTTGCGGTCAATAAAGTA-GGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1390 >seq2823 Length=1025 Score = 293 bits (324), Expect = 7e-75 Identities = 388/534 (73%), Gaps = 6/534 (1%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||| || || || || || |||||||| || || | ||||| || Sbjct 554 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 495 Query 21531 G-CACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGA 21589 | | ||||| | ||| |||||||| || || || || | || | | | | | | ||| Sbjct 494 GTCGCGGTTGATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGA 435 Query 21590 TTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTA--GACACGCCAAGCGCAGCA 21647 ||| || || || |||||||| |||||||||||||| || || || ||||| | Sbjct 434 TTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTG-- 377 Query 21648 AACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTA 21707 ||||| |||||||| |||||||| ||||| | ||||| || | | ||| ||||| || Sbjct 376 AACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAATTGTTG 317 Query 21708 AAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAA 21767 || ||||||||||||||||| | || |||||||| || ||||| || || ||||| || Sbjct 316 AAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAG 257 Query 21768 GTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCA 21827 || |||||||||||||| || ||||||| | || || | | ||| || || || Sbjct 256 GTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 197 Query 21828 CGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAAT 21887 | || | || || |||| ||| ||||||||| ||| | || |||||| Sbjct 196 CTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAAT 137 Query 21888 ACGCCGGCCACACCCAGCATGT-GAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAA 21946 || || |||||||| ||||||| |||| || |||||||| || ||||||||||| ||||| Sbjct 136 ACACCAGCCACACCTAGCATGTAGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAA 77 Query 21947 CACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAA 22000 || | |||| ||||||| || || || || || | |||||| | |||||||| Sbjct 76 TACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAA 23 >seq838 Length=1002 Score = 277 bits (306), Expect = 5e-70 Identities = 411/576 (71%), Gaps = 5/576 (1%) Strand=Plus/Plus Query 21854 ACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAA 21913 ||| ||||||||| ||| | || |||||||| || |||||||| ||||||||||| Sbjct 18 ACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACACCTAGCATGTGAAA 77 Query 21914 AGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGA 21973 || |||||||| || ||||||||||| ||||| || | |||| ||||||| || || || Sbjct 78 TGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAGTACCAGA 137 Query 21974 TATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACAC 22033 || || | |||||| | |||||||| || || |||| || || | | ||| || Sbjct 138 GATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAAC 197 Query 22034 AGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAG 22093 |||||| ||||| || |||||||| || || |||||| ||||| || | ||| || || Sbjct 198 AGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAG 257 Query 22094 TCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAA-AGACGCCAATGAGGAAGTGGA 22152 || | |||||||||||||| || ||||| | ||||| || |||| | |||||| | Sbjct 258 ACGGAAACTAAGTTCCCACTCACGACCCATAT-AGCAAGCTACACCAAGTAAGAAGTGTA 316 Query 22153 ATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCC 22212 || | || | | || || |||||||| | ||||||||||| | ||| ||||||| Sbjct 317 GAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCC 376 Query 22213 AAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGA 22272 | |||||||| ||||| | || || || | | || | | ||| || || || | Sbjct 377 ATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAA 436 Query 22273 TGTTGTTACCATACAACAGGGAGCCAGCGACGGGTT-CTCGGATTCCATCGATGTCAACA 22331 | ||||| || || | | || |||| || |||| | || || ||||| || || || Sbjct 437 TATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTACACGAATACCATCAATATCTACC 496 Query 22332 GGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAAT 22390 || ||||| ||| || || |||||||| || || |||| ||| | | | || || Sbjct 497 GGAGGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGCGGTCAATAAAGTA-GGGAT 555 Query 22391 CATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 ||| | || || |||||||| | ||||||||||| Sbjct 556 CATCAAAACACCAAACCATCCAATGTAAAGACGGTT 591 >seq929 Length=1222 Score = 273 bits (302), Expect = 6e-69 Identities = 395/551 (72%), Gaps = 5/551 (1%) Strand=Plus/Minus Query 21879 CCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCA 21938 || |||||||| || |||||||| ||||||||||| || |||||||| || ||||||||| Sbjct 1212 CCGCCAAATACACCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 1153 Query 21939 GCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAA 21998 || ||||| || | |||| ||||||| || || || || || | |||||| | |||||| Sbjct 1152 GCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAA 1093 Query 21999 AAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCA 22058 || || || |||| || || | | ||| |||||||| ||||| || |||||||| Sbjct 1092 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 1033 Query 22059 GAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGT 22118 || || |||||| ||||| || | ||| || || || | |||||||||||||| || Sbjct 1032 GAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGA 973 Query 22119 CCCATGTAAGCAAAG-ACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCC 22177 ||||| || |||| || |||| | |||||| | || | || | | || || || Sbjct 972 CCCATATA-GCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCACC 914 Query 22178 GTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGAT 22237 |||||| | ||||||||||| | ||| |||||||| |||||||| ||||| | || || Sbjct 913 GTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTAT 854 Query 22238 GGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCC 22297 || | | || | | ||| || || || || ||||| || || | | || || Sbjct 853 AGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCC 794 Query 22298 AGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGC-GCCAACAAAGGCGATAA 22356 || || ||||| || || ||||| || || || || ||||| || | |||| |||| Sbjct 793 AGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCTAATAA 734 Query 22357 TAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACA 22415 |||| || || |||| ||| | | | || ||||| | || || |||||||| | Sbjct 733 TAAATACAGAAGTTGCGGTCAATAAAGTA-GGGATCATCAAAACACCAAACCATCCAATG 675 Query 22416 TAAAGACGGTT 22426 ||||||||||| Sbjct 674 TAAAGACGGTT 664 >seq2704 Length=1012 Score = 107 bits (118), Expect = 6e-19 Identities = 180/258 (70%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 22170 GGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGT 22229 || || |||||||| | ||||||||||| | ||| |||||||| |||||||| ||||| Sbjct 961 GGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGC 902 Query 22230 AGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAAC 22289 | || || || | | || | | ||| || || || || ||||| || || | Sbjct 901 AAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGT 842 Query 22290 AGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAG 22349 | || |||| || ||||| || || ||||| || || || || ||||| ||| || Sbjct 841 AAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAA 782 Query 22350 GCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCA 22408 || |||||||| || || |||| ||| | | | || ||||| | || || ||||| Sbjct 781 GCAATAATAAATACAGAAGTTGCGGTCAATAAAGTA-GGGATCATCAAAACACCAAACCA 723 Query 22409 TCCTACATAAAGACGGTT 22426 ||| | ||||||||||| Sbjct 722 TCCAATGTAAAGACGGTT 705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146202708001440