Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 91.5 2e-13 >seq6 Length=38222195 Score = 91.5 bits (100), Expect = 2e-13 Identities = 225/339 (66%), Gaps = 12/339 (4%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || |||||||| || || || || || || |||||| | ||| || || Sbjct 16169660 CCAGGAACTGGAAAGACTCTGCTAGCAAAGGCAATTGCTGGTGAAGCTGGTGTTCCTTTT 16169601 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | | | ||||| || |||||||||||||| ||||| | || Sbjct 16169600 TTCTCTATCTCAGGTTCTGAGTTTGTTGAAATGTTTGTTGGTGTTGGTGCTTCTCGAGTC 16169541 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| ||| | | || ||||| ||| || ||||| || ||||||| ||| Sbjct 16169540 CGTGATCTTTTTAAGAAGGCTAAGGAAAACGCACCTTGCATTGTATTTGTTGATGAAATT 16169481 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAA 175551 ||||| || || ||| | | |||| |||| || ||||| || |||||| Sbjct 16169480 GATGCTGTTGGACGTCAAAGAGGAACTGGAATTGGT---GGAGGCAATGATGAAAGAGAA 16169424 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGG---CATT 175608 || || ||||||| || | || || |||||||| ||||| | | ||||| |||| Sbjct 16169423 CAGACCCTTAATCAGCTTTTGACAGAAATGGATGGTTTTGAGGGTAACACTGGTATCATT 16169364 Query 175609 GTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 |||| |||| || ||||| | | ||||| || ||| Sbjct 16169363 GTGG---TTGCAGCAACTAACAGGGCAGATATTCTCGAT 16169328 Score = 84.2 bits (92), Expect = 3e-11 Identities = 138/198 (70%), Gaps = 7/198 (4%) Strand=Plus/Minus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT--CCTTCGCCGAG 65079 ||| |||||| | ||||| |||||||| | ||| | ||| | ||||| ||| Sbjct 28139231 GAAAAAGGCGCAGTGGGCCCTGAAATGGATCGAC-----GGCTCCGAAACTTTCGCGGAG 28139177 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || | | || || || || ||||| || ||||||||||| || |||||||| || Sbjct 28139176 CGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTCTGCGCGATA 28139117 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | |||| | || ||||| || | ||||| || || |||||| || || | || || Sbjct 28139116 TTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCG 28139057 Query 65200 CGAGATGAGGGTCTCCAC 65217 |||||||| || |||||| Sbjct 28139056 CGAGATGAAGGCCTCCAC 28139039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596546870698240