Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq3048 489 2e-133 seq2823 334 9e-87 seq838 297 2e-75 seq929 260 2e-64 seq2704 134 2e-26 >seq3048 Length=155691 Score = 489 bits (542), Expect = 2e-133 Identities = 714/1003 (71%), Gaps = 7/1003 (1%) Strand=Plus/Plus Query 7874 CGGAAGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAA 7933 ||||| | ||| ||| |||| ||||| ||||| || || ||||| | ||||||||||| Sbjct 419 CGGAACT-TCAACAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAA 477 Query 7934 CTTCCATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACC 7991 |||||||||| | || || | ||| ||||| ||| |||| ||| ||| | ||| Sbjct 478 CTTCCATACCAAGATTAGCGCGGTTGATAATA--TCAGCCCAAGTATTAATTACACGACC 535 Query 7992 ATTAACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCA 8051 | | |||||| || ||||| || || ||||| || || | ||| || ||||| |||| Sbjct 536 TTGACTATCAACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCT 595 Query 8052 AATACCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAG 8111 ||||| | || || ||||| | || ||| || || | | ||| | ||||||||| | Sbjct 596 GATACCTAAAGCGGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAA 655 Query 8112 ACTTCTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAG 8170 | | | ||||| |||| | ||||| |||||||| |||| ||||| || ||||||| Sbjct 656 AGAACGAGAATTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAG 714 Query 8171 CAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACT 8230 | || || ||||||||||| ||||| |||||||| || | ||||| | || ||| | Sbjct 715 CGGCTACGATATTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATT 774 Query 8231 CTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGA 8290 | | ||| || || || ||||| | | ||| || || |||||||| ||||||||||||| Sbjct 775 CATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGA 834 Query 8291 AGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGT 8350 | || || || || || | ||| || || ||| ||| || || || |||||||| |||| Sbjct 835 ATAGGGAACCGCCAAATACACCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGATGT 894 Query 8351 TATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTC 8410 | ||||| ||||||||||| | ||||||||| || |||||||| || ||||||||||| | Sbjct 895 TGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATAC 954 Query 8411 CATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATA 8470 | ||||| || || ||||||| ||| || | ||||| || || |||||| | | Sbjct 955 CGTCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAA 1014 Query 8471 CTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCC 8530 | ||||| |||||| ||| ||||| || | |||||| | ||| | | |||| Sbjct 1015 CAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCC 1074 Query 8531 ACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATG 8590 ||| | |||||| || || | |||| | |||||| | | || | || ||| | Sbjct 1075 ACTCACGACCCATATAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAG 1134 Query 8591 GACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTA 8650 | || ||||| || ||||| ||||| | | || |||||||| || || || ||||| | Sbjct 1135 GGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCA 1194 Query 8651 ATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGA 8710 | || ||||| |||| || | | ||||| || || || |||||||| || | | Sbjct 1195 AACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTA 1254 Query 8711 ATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATG 8770 | || || | |||||||||||||||||| || ||||| || || || |||||||| || | Sbjct 1255 AAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAG 1314 Query 8771 CCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAAC 8830 | | ||||| || || || | || || ||| ||||| | ||| |||||||| | Sbjct 1315 CAATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATC 1374 Query 8831 CGACATAAAGTCTGTTGTTTGTACTTGTAACCCACTCGCAAAA 8873 | | ||||| | ||| | || || || | ||| | ||||| Sbjct 1375 CAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAATTACAAAA 1417 >seq2823 Length=1025 Score = 334 bits (370), Expect = 9e-87 Identities = 423/573 (74%), Gaps = 9/573 (2%) Strand=Plus/Minus Query 7874 CGGAAGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAA 7933 ||||| | ||| ||| |||| ||||| ||||| || || ||||| | ||||||||||| Sbjct 570 CGGAACT-TCAACAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAA 512 Query 7934 CTTCCATACCTAAGTTTG-CTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTAC 7990 |||||||||| | || | | | ||| ||||| ||| |||| ||| ||| | || Sbjct 511 CTTCCATACCAAGATTAGTCGCGGTTGATAATA--TCAGCCCAAGTATTAATTACACGAC 454 Query 7991 CATTAACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGC 8050 | | | |||||| || ||||| || || ||||| || || | ||| || ||||| |||| Sbjct 453 CTTGACTATCAACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGC 394 Query 8051 AAATACCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAA 8110 ||||| | || || ||||| | || ||| || || | | ||| | ||||||||| | Sbjct 393 TGATACCTAAAGCGGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTA 334 Query 8111 GACTTCTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGA 8169 | | | ||||| |||| | ||||| |||||||| |||| ||||| || |||||| Sbjct 333 AAGAACGAGAATTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGA 275 Query 8170 GCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGAC 8229 || || || ||||||||||| ||||| |||||||| || | ||||| | || ||| Sbjct 274 GCGGCTACGATATTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGAT 215 Query 8230 TCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTG 8289 || | ||| || || || ||||| | | ||| || || |||||||| |||||||||||| Sbjct 214 TCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTG 155 Query 8290 AAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAA-GGATGCATAAGAAT 8348 || || || || || || | ||| || || ||| ||| | |||| || |||||||| || Sbjct 154 AATAGGGAACCGCCAAATACACCAGCCACACCTAGCATGTAGAAATGGGTGCATAAGGAT 95 Query 8349 GTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCAT 8408 ||| ||||| ||||||||||| | ||||||||| || |||||||| || ||||||||||| Sbjct 94 GTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCAT 35 Query 8409 TCCATCAGAGAATGAACCCTGACCAAATGGATA 8441 || ||||| || || ||||||| ||| || Sbjct 34 ACCGTCAGAAAAGCTTCCTTGACCAATTGGGTA 2 >seq838 Length=1002 Score = 297 bits (328), Expect = 2e-75 Identities = 436/616 (71%), Gaps = 1/616 (0%) Strand=Plus/Plus Query 8259 AGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTAC 8318 ||| || || |||||||| |||||||||||||| || || || || || | ||| || || Sbjct 3 AGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCAC 62 Query 8319 CCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAA 8378 ||| ||| || || || |||||||| ||||| ||||| ||||||||||| | |||||| Sbjct 63 ACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAA 122 Query 8379 GTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGG 8438 ||| || |||||||| || ||||||||||| || ||||| || || ||||||| ||| Sbjct 123 GTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGG 182 Query 8439 ATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCA 8498 || | ||||| || || |||||| | || ||||| |||||| ||| ||||| Sbjct 183 GTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCA 242 Query 8499 TGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCC 8558 || | |||||| | ||| | | ||||||| | |||||| || || | || Sbjct 243 AGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAGCAAGCTACACC 302 Query 8559 AATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAA 8618 || | |||||| | | || | || ||| || || ||||| || ||||| ||||| | Sbjct 303 AAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAAC 362 Query 8619 TGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGAC 8678 | || |||||||| || || || ||||| || || ||||| |||| || | | Sbjct 363 AGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAAT 422 Query 8679 AGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTT-CACGAATAC 8737 ||||| || || || |||||||| || | || || || | |||||||| ||||||||| Sbjct 423 GGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTACACGAATAC 482 Query 8738 CGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTA 8797 | || ||||| || || || |||||||| || || | ||||| || || || | | Sbjct 483 CATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGCGGTCA 542 Query 8798 ACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACTTG 8857 | || ||| ||||| | ||| |||||||| || | ||||| | ||| | || || | Sbjct 543 ATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGG 602 Query 8858 TAACCCACTCGCAAAA 8873 | | ||| | ||||| Sbjct 603 TTATCCAATTACAAAA 618 >seq929 Length=1222 Score = 260 bits (288), Expect = 2e-64 Identities = 410/586 (70%), Gaps = 1/586 (0%) Strand=Plus/Minus Query 8289 GAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAAT 8348 ||| || || || || || | ||| || || ||| ||| || || || |||||||| || Sbjct 1222 GAATAGGGAACCGCCAAATACACCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGAT 1163 Query 8349 GTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCAT 8408 ||| ||||| ||||||||||| | ||||||||| || |||||||| || ||||||||||| Sbjct 1162 GTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCAT 1103 Query 8409 TCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGA 8468 || ||||| || || ||||||| ||| || | ||||| || || |||||| | Sbjct 1102 ACCGTCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGC 1043 Query 8469 TACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTC 8528 || ||||| |||||| ||| ||||| || | |||||| | ||| | | || Sbjct 1042 AACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTC 983 Query 8529 CCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATA 8588 ||||| | |||||| || || | |||| | |||||| | | || | || ||| Sbjct 982 CCACTCACGACCCATATAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATA 923 Query 8589 TGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTG 8648 || || ||||| || ||||| ||||| | | || |||||||| || || || ||||| Sbjct 922 AGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTG 863 Query 8649 TAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACAT 8708 || || ||||| |||| || | | ||||| || || || |||||||| || | Sbjct 862 CAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAG 803 Query 8709 GAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAA 8768 || || || | |||||||||||||||||| || ||||| || || || |||||||| || Sbjct 802 TAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAA 743 Query 8769 TGC-CACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACC 8827 || | ||||| || || || | || || ||| ||||| | ||| ||||||| Sbjct 742 AGCTAATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACC 683 Query 8828 AACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCACTCGCAAAA 8873 | || | ||||| | ||| | || || || | ||| | ||||| Sbjct 682 ATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAATTACAAAA 637 >seq2704 Length=1012 Score = 134 bits (148), Expect = 2e-26 Identities = 220/317 (69%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 8557 CCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCT 8616 |||| | |||||| | | || | || ||| || || ||||| || ||||| ||||| Sbjct 994 CCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCA 935 Query 8617 AATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACG 8676 | | || |||||||| || || || ||||| || || ||||| |||| || | Sbjct 934 ACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATA 875 Query 8677 ACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATA 8736 | ||||| || || || |||||||| || | || || || | |||||||||||||||| Sbjct 874 ATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCACGAATA 815 Query 8737 CCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCT 8796 || || ||||| || || || |||||||| || || | ||||| || || || | Sbjct 814 CCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGCGGTC 755 Query 8797 AACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACTT 8856 || || ||| ||||| | ||| |||||||| || | ||||| | ||| | || || Sbjct 754 AATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTG 695 Query 8857 GTAACCCACTCGCAAAA 8873 || | ||| | ||||| Sbjct 694 GTTATCCAATTACAAAA 678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615838935642560